PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.8GW84 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 27484.7 Da PI: 7.6097 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.7e-40 | 40 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r++a+++++yeA+ar++dPvyG+v++il+lqqq+++l+ae+a++ Araip.8GW84 40 PCGACKFLRRKCVAGCIFAPHFSSDQgAAKFAAVHKVFGASNVSKLLLHVPAHRRNEAVATICYEAQARLSDPVYGCVSTILSLQQQVASLQAEVAMT 137 7************************989********************************************************************99 PP DUF260 98 kee 100 +++ Araip.8GW84 138 QTQ 140 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.951 | 39 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-39 | 40 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:1.20.1600.10 | 9.3E-5 | 122 | 170 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAEPQGGGAE GSRRRSTSAA RRGAAAPTQE GAPPPSPSSP CGACKFLRRK CVAGCIFAPH 60 FSSDQGAAKF AAVHKVFGAS NVSKLLLHVP AHRRNEAVAT ICYEAQARLS DPVYGCVSTI 120 LSLQQQVASL QAEVAMTQTQ VMNGRIAYAS VLDTTQQQQQ PQQQALQHHH PNMMINNLGL 180 YPAFSNSSSA STTNLMNITN FNPATGGFDL SMEAATAPSS SHSIHPLHHN SNFSRLSQYD 240 DDDEQESKIP PVFNPDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-38 | 25 | 143 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-38 | 25 | 143 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.8GW84 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016181537.1 | 0.0 | LOB domain-containing protein 20 | ||||
Refseq | XP_025680428.1 | 0.0 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-63 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A444X9U1 | 0.0 | A0A444X9U1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G11031.1 | 3e-89 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-50 | LOB domain-containing protein 20 |