PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8FI38
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1652aa    MW: 183579 Da    PI: 6.3312
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8FI38genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23145246199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Araip.8FI38 145 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 238
                  99*****************************96555555..8************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Araip.8FI38 239 LLLGIRRA 246
                  9****997 PP
2Auxin_resp118.55.4e-39271354183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Araip.8FI38 271 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 354
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-48130274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-42138260IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-21144245No hitNo description
SMARTSM010192.1E-24145247IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52145247IPR003340B3 DNA binding domain
PfamPF023621.8E-21145246IPR003340B3 DNA binding domain
PfamPF065073.6E-34271354IPR010525Auxin response factor
PfamPF023093.2E-6769861IPR033389AUX/IAA domain
SuperFamilySSF542775.49E-8770857No hitNo description
PROSITE profilePS5174523.327779863IPR000270PB1 domain
PROSITE profilePS513757.84810081042IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001910111041IPR002885Pentatricopeptide repeat
PfamPF015350.1110111040IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.84210431078IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.13310791113IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.62211141148IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-711171150IPR002885Pentatricopeptide repeat
PfamPF015350.01211171146IPR002885Pentatricopeptide repeat
PfamPF130412.4E-1211481197IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.47711491183IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.0E-711521185IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.7E-511561336IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.08211841218IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-611871220IPR002885Pentatricopeptide repeat
PfamPF128549.3E-812141245IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.28412191249IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.002212221245IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.29912501285IPR002885Pentatricopeptide repeat
PfamPF015352.2E-412521274IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.4E-712531286IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.59212861320IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-912881320IPR002885Pentatricopeptide repeat
PfamPF130414.5E-1612881334IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.02513211355IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.69E-613221556IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007561.9E-913231356IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.3E-713371561IPR011990Tetratricopeptide-like helical domain
PfamPF130416.8E-1813561404IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.92113561390IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-1013601392IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.18113911425IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-513931426IPR002885Pentatricopeptide repeat
PfamPF130411.1E-1814261473IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.98114261460IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-614281461IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.90214611495IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-914631497IPR002885Pentatricopeptide repeat
PfamPF128542.8E-1014911523IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.38614961530IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-814991532IPR002885Pentatricopeptide repeat
PfamPF130411.9E-1615301578IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.99815311565IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.4E-1015331567IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.08415661600IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.4E-415681602IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0032543Biological Processmitochondrial translation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1652 aa     Download sequence    Send to blast
MMLDLNVLGT LSVAESMKLS SSGFNQPAEE EGEKKTLNSE LWHACAGPLV SLPLVGSRVV  60
YFPQGHSEQV AASTNREADA HIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLN  120
PQEQKDVYLL PAELGTPSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYTQQP  180
PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL  240
LGIRRANRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLTK  300
YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES  360
TAGDRQPRVS LWEIEPLTTF PMYPSPFPLR LRRPWPSGLP SLYGLKDGGD MGINSPFMWL  420
QSGLGDQGMQ SLNFQGIGVT PWMQPRFDAS MPGLQPELYQ AMTSAAFQEM RTMDPSKPSS  480
QSLLQFQQPS NVPSAFASEL QRQVLPQSQP QNTLLQNFQE HQTPAPSQIS PQQLHRYHPY  540
SDQRQQQQQL KTVPVQQQLQ NLVSPLSNFA SATQPQSPSL QALASHCQQQ SFPEPIRNHV  600
SSSDVSPMQS LLGSFSQDGA SQLLNRNGPN SVMSSGALLP KQITIESQVP SAGAQCVLPQ  660
VENLGTSQSN VSELTALPPF PGREHSGYQG AADPHSNLLF GINIDPSSLM LQNGMQNLRN  720
LGNVNDSLSM TFSAPNCGGA NAPGSDFPLS SNVTTSSCVD ESGFLQSSEN VDQSNTPTGT  780
FVKVHKSRSL GRSLDISKFS SYDELRSELA RLFGLEGQLE DPQRSGWQLV FVDRENDILL  840
LGDDPWQEFV NSVWSIKILS PLEVQQMGKG VVPSTSAPSA QKLSSTATTN SCDNNYGVGK  900
QELRSSSNGM ASMGTILFSV KIASFPLCTT TTTTLGAKKD QFWDSAEEES SDNEWERLLK  960
PFGLKQLRSS LSPISPSQLC KLLLLPLDIP TTMELFEKAG SQNGYSHSFD VYCILIDKLG  1020
SNGDFKTIDL LLKQMKDEGI VFKESIFIMI MRYYGKAGLP GQATRLLLDM WGVYDCEPSF  1080
KSYNVVLEIL VAGNCPKVAP NVFYDMLNRG VSPTVSTFGV VMKALCMINE VDSACSLLKD  1140
MMKHGCVPNS IIYQTLIHTL SQNNRVNEAM KLLEEMFLMG CEPDVQTFND VIYGLCRASR  1200
IHEAAKLLDR MLLRGFSADE LTYGFLINGL CRTGHVDEAR ALLNKIPNLN AVHYNTLING  1260
YVARGRFDEA KDLLYNNMVI SGYKPDGFTF NIMIDGFCKK GRLVSALEFL HEMVTKGFEP  1320
CVVTYTILIN GFCKQGRLDE AVEVVNAMWA KGLSLNTVGY NCLISAVCKD GRTEEALQLF  1380
GEMSSKGCKP DIYTFNSLIF GMCNDDKMEE ALRLYRDMFM EGVIANTVTY NTLIHAFIRR  1440
GAIQQAFKLV DEMIFRGCPL DNITYTTLIK ALCMAGEVEK GLAFFEEMLG KGIFPDTNCC  1500
NILINAFCRI GKVNDALQFL RDMIHRGLIP DIVTYNCLIN GLCKMGHLQE ALNLFNRLQA  1560
EGMRPDAITY NTLVSRYCYE GLFNEACLMM YKGVDNGFVP NEITWYILLN YFARVLRGVG  1620
PSSRVDMGYA NLMYKARGTW MLKRGEDGER GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1583337547388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8FI38
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166035.10.0auxin response factor 6 isoform X1
RefseqXP_025666965.10.0auxin response factor 6 isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A445C4110.0A0A445C411_ARAHY; Auxin response factor
STRINGGLYMA14G03650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]