PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8B8PN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 529aa    MW: 60207.2 Da    PI: 8.8903
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8B8PNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k+ l+H+H+++p
  Araip.8B8PN  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVMLDHSHPCCP 137
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.038316352IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4325349IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4327354IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVMLD HSHPCCPSKA EMLKQHRKLS MSIRHAIENN EEAGIRPSKT YQSFVAAAGD  180
LYKDRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNKYITR NSSLIQFVKQ YDNCLRSREQ  240
AERESDAADF HTVIPCATKS SIEAQFQDAY THQKFREVQA QFRGKANCIT RLTNSALGYS  300
VYEVGEQVSS SIFNKFVITY DSVAAEVKCQ CLLFESRGIL CRHALSVLSF EQVSQVSPRY  360
ILERWSKKVK RRHTHIKSSH DEPLMEPRSK RFDQLVFRSQ NICEFASESE ELTAILHCAY  420
DNVMAEMESL KAKRKGTSSL SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLDKQIANA  480
TKKKKTKVLS EINLFDAASA VHSNSSQYQG HVMNYQFMVP AAVDNSLSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8B8PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444X8170.0A0A444X817_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-34far-red elongated hypocotyls 3