PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.87M6M | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 31363.8 Da PI: 6.3144 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 49 | 101 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk l+L+ rq+ +WFqNrRa++k Araip.87M6M 49 KKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWK 101 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 3.9e-40 | 47 | 139 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+ eqvk+LE+sFe +kLeperKv+la++L+lqprq+a+WFqnrRAR+ktkqlE++ye+Lk++++alk +n++L+ ++++L++el++ Araip.87M6M 47 EKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWKTKQLEREYESLKKQFEALKVDNDALKVQNQKLHAELQA 139 69***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.38E-19 | 35 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-17 | 46 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.70E-15 | 48 | 104 | No hit | No description |
Pfam | PF00046 | 6.5E-15 | 49 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 55 | 102 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 8.3E-14 | 103 | 140 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGSHQFLGGG GPFMLKRSMS FSGIENKCGG DGDDDLSDDG FGFQFGEKKK RLNIEQVKAL 60 EKSFELGNKL EPERKVQLAK ALNLQPRQIA IWFQNRRARW KTKQLEREYE SLKKQFEALK 120 VDNDALKVQN QKLHAELQAL IKGKEYYCEE EDGAIISNLN KKEAGEGSWS NNNNNNGCSD 180 NNNISSSDIN LDLSTTPIIN TSPVSSQNAK TTLESNNDNS LKPNNIIQLL QYSPPSSSRP 240 QGIPHQDEGL CNMFHHQIDD QQNLWPWPEH QPHNNFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.87M6M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196791.1 | 0.0 | homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
Refseq | XP_025649912.1 | 0.0 | homeobox-leucine zipper protein HAT7 isoform X1 | ||||
Swissprot | Q00466 | 4e-67 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A444ZQ18 | 0.0 | A0A444ZQ18_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G37410.1 | 9e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 7e-57 | homeobox 3 |