PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.85A5N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-PHD
Protein Properties Length: 715aa    MW: 80781.2 Da    PI: 8.4662
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.85A5NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.5e-10499543953
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ +e L ++F+ n  p ++ +e+++k+lg++ ++V+ WF+N R+
  Araip.85A5N 499 HHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARY 543
                  7899***************************************97 PP
2PHD35.42.4e-12238293151
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C+   +  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  Araip.85A5N 238 FCAKCKLpeAFPDNDIILCDgTCNRAFHQRCLDPPLDTENIPPGdqCWFCKFCECK 293
                  699999855556********56********************99999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.66E-14230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.2E-12234294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.424236293IPR019787Zinc finger, PHD-finger
PfamPF006281.8E-9238293IPR019787Zinc finger, PHD-finger
SMARTSM002491.4E-8238291IPR001965Zinc finger, PHD-type
CDDcd155042.75E-29238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007110.673488548IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-9489542IPR009057Homeodomain-like
SMARTSM003891.1E-7490552IPR001356Homeobox domain
SuperFamilySSF466896.42E-9491552IPR009057Homeodomain-like
CDDcd000862.60E-7491552No hitNo description
PfamPF000468.3E-8498543IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRDTEKKLNK RGFRKSSHSR KHTDSKLDLS PRFETSSTKG QGKKQKLKSK PHKLVVCTAT  60
SRGTATDSSS IKGSIKDASS EKLIVGQNMH YNDGKSLQML SSTKQPGEKI SFGPIVDGND  120
ADGEVNIQKV KRRRRRKRRR DNVDLDDALR LQRRTRYLLI KMKVEQNLID AYSGEGWKGQ  180
SREKIRPEKE LQRAKKQILK CKLGIRDVIC QLDALSSVGR IEDSVIAPDG SVYHEHIFCA  240
KCKLPEAFPD NDIILCDGTC NRAFHQRCLD PPLDTENIPP GDQCWFCKFC ECKMEILEAT  300
NAHLGTDFSL DSTWQDVFKE EATVPDDCAA LLNPEEEWPS DDPEDDDYNP DRRENTHNIN  360
AEGTDESPSD SSSSISLSSL NDEYSPVDKA MSLEYLSVNS CVDSDGYGEI VCSRRQRKAV  420
DYRKLYDEMF KDAPPCEQMS EDEDWGPGKR KRREKESDAA NTLMTLHESD NKFPNNENND  480
TVREGAHTHV KRSCFRIPHH AVEKLRQVFA DNELPPRSVK EHISKELGID AAKVSKWFKN  540
ARYLALKTRK HQVEGGELPL SLLCKTSKGS SLQIVDKDEI LQKSKASKIA MVHSPNNGNG  600
ITDRQKVKSS SGSIWKKRQP EISPAKTAEN GNKDLEEGSD DVGLKKLLQE KKRKMEFVFG  660
GDSKAAELEF ERLSKLKAKL DSMKVKLIEV QNHRAKGAKE PCVIYVPTAQ LREKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135KRRRRR
2131138RRRRRKRR
3131139RRRRRKRRR
4133139RRRKRRR
5133140RRRKRRRD
6135139RKRRR
7449454RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.85A5N
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202672.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_016202673.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_025654369.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_025654370.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-146PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A444Z6K00.0A0A444Z6K0_ARAHY; Uncharacterized protein
STRINGXP_004487993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-147pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]