PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.818VB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 639aa    MW: 72804.6 Da    PI: 6.0135
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.818VBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.82.9e-2848149186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                  rW++qe+laL+++r++m++ +r+++lk+plWeevs++                  e g++rs+k+Ckek+en+ k++k++ke+++++++++ +t+++f
  Araip.818VB  48 RWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRYTlytslsffislyirklGELGYHRSAKKCKEKFENVYKYHKRTKENRSGKSEGKIKTYKFF 145
                  8************************************************************************************************* PP

     trihelix  83 dqle 86 
                  dql+
  Araip.818VB 146 DQLQ 149
                  **98 PP
2trihelix104.48.5e-33428513187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r++me +++++  k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r  e+s+tcpyf++l+a
  Araip.818VB 428 RWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQR-REDSKTCPYFHELDA 513
                  8********************************************************************98.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.845123IPR001005SANT/Myb domain
PfamPF138376.4E-1547151No hitNo description
CDDcd122035.68E-1947128No hitNo description
PROSITE profilePS500905.64547121IPR017877Myb-like domain
SMARTSM007170.02425487IPR001005SANT/Myb domain
PfamPF138378.9E-23427514No hitNo description
PROSITE profilePS500907.085427485IPR017877Myb-like domain
CDDcd122031.83E-26428492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MQLGDPTVLE TSTGAAAEGG AEAIGSEISI KEGGGDEGEK MNFGGGNRWP RQETLALLKI  60
RSDMDSVFRD SSLKGPLWEE VSRYTLYTSL SFFISLYIRK LGELGYHRSA KKCKEKFENV  120
YKYHKRTKEN RSGKSEGKIK TYKFFDQLQA LENHQFTLSY NPTPKPQPPP TLPTNTLPLL  180
PTRPSDATTT TTTVPSTNPT PPPTTTTTVV TNPNPSSQEN NNNINNTDSR VQHSLPIMNN  240
LFSSTSTSSS TASDEDLEEK YRNKRKWKEY FRRLTRQVLA KQEEMQKRFL EAIDKREREQ  300
VAQQDAWRMQ EMTRINREHD ILVQERSTAA AKDAAVIAFL QKLSGQQQTP PPPPPPQPPI  360
TVSFGANFFQ QPTPTPTPTP TPVQVQPPPH PHPQPQPQPQ PQPQKQLQPA ALTNGDSPGP  420
LSSPSSSRWP KAEVHALIRL RTSMEPKYQE NGPKAPLWED ISAGMQRLGY NRSAKRCKEK  480
WENINKYFKK VKESKKQRRE DSKTCPYFHE LDALYREKSK GQNTNTFSFH ITNKTNEMMM  540
EPLMVQPEQQ WRPPPQYQQQ QQQQDKDVDK SNNNNNACHE DDESRKRERE YDHEEEEEDD  600
DDDEVVDDDD DGDGDSVEDE GGNRYEIATN KLSSVDAVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.818VB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176228.10.0trihelix transcription factor GT-2 isoform X1
RefseqXP_020966450.10.0trihelix transcription factor GT-2 isoform X1
TrEMBLA0A445BDH60.0A0A445BDH6_ARAHY; Uncharacterized protein
STRINGGLYMA16G28240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-46Trihelix family protein