PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7S167
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 305aa    MW: 32844.9 Da    PI: 9.3126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7S167genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC +C+k +  +s+ k H + +
  Araip.7S167 48 WKCDKCNKKYAVQSDWKAHSKIC 70
                 58*****************9876 PP
2zf-C2H212.40.000477896523
                 TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                 dCg++Fsr++++ +H   +
  Araip.7S167 78 DCGTVFSRRDSFITHRAFC 96
                 9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-52468No hitNo description
Gene3DG3DSA:3.30.160.601.4E-43669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MHKDYPKAGL NPSAEVIALS PNTLCGRALG DLTGIKKHFS RKHGDKKWKC DKCNKKYAVQ  60
SDWKAHSKIC GTKEYKCDCG TVFSRRDSFI THRAFCDALA DENNKVNNEG GVLGHFPKIG  120
SNLLQPLIPN LVASLPITRN NSSSNNSNPH IISTSEFKQH PSFPHELVPI GGVHLAAGLP  180
HMSATALLQK AAQMGATSVS NNNNNTSMAP PSFASSNNGI IMEHFMHNAH PQHDNISSSQ  240
FNNNNNFNGS VGMNGVEMFN AILDQSKALA KIIDQNNRSS GFSIPPVSGR SSSTINIGGA  300
KGSED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3344108367Zinc finger protein JACKDAW
5b3h_F4e-3344108367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7S167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205535.21e-179LOW QUALITY PROTEIN: protein indeterminate-domain 2
TrEMBLA0A444YJZ01e-175A0A444YJZ0_ARAHY; Uncharacterized protein
STRINGXP_007144938.11e-102(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-39indeterminate(ID)-domain 2