PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7MS83

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 405aa MW: 44732.1 Da PI: 6.9107

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7MS83	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Araip.7MS83 106 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 166 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	96	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	107	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MMMVDNKDPA ITLFGKKIPF PGEAALNAAE LEDDEVDKQV GHKDDGADEV TEKKKEADPS 60 RNGNAEINKR KDWGVQNPKT PSIEEESAKI KKEQSDAEQE KAVKKPDKVL PCPRCNSMDT 120 KFCYYNNYNV NQPRYFCKAC QRYWTAGGTM RNVPVGAGRR KNKNSASASH YRHINISDGT 180 LKSSGRVLSF GLDTPPPPIC DSMASVLNGF HGIEDQSGEN GDDCSSASSI TMEETGKTAS 240 QEPLAQSPPQ VPCIPSVPWP YPWNSALCPP GFPISFYPAP LWNWNVPWFP SHPSTPNSPT 300 LGKHSRDDGD DDTVKQDYRR KEEPPRQRNG CVLVPKTLRI DDPSEAAKSS IWATLGIKNE 360 CVIGGGMFKA FRSNKEEKNK VVETSPVLLA NPAALSRSLH FHENS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MMMVDNKDPA ITLFGKKIPF PGEAALNAAE LEDDEVDKQV GHKDDGADEV TEKKKEADPS  60
RNGNAEINKR KDWGVQNPKT PSIEEESAKI KKEQSDAEQE KAVKKPDKVL PCPRCNSMDT  120
KFCYYNNYNV NQPRYFCKAC QRYWTAGGTM RNVPVGAGRR KNKNSASASH YRHINISDGT  180
LKSSGRVLSF GLDTPPPPIC DSMASVLNGF HGIEDQSGEN GDDCSSASSI TMEETGKTAS  240
QEPLAQSPPQ VPCIPSVPWP YPWNSALCPP GFPISFYPAP LWNWNVPWFP SHPSTPNSPT  300
LGKHSRDDGD DDTVKQDYRR KEEPPRQRNG CVLVPKTLRI DDPSEAAKSS IWATLGIKNE  360
CVIGGGMFKA FRSNKEEKNK VVETSPVLLA NPAALSRSLH FHENS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7MS83

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187792.1	0.0	cyclic dof factor 3
Refseq	XP_025641298.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-114	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445AB16	0.0	A0A445AB16_ARAHY; Uncharacterized protein
STRING	GLYMA06G20950.1	1e-168	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-108	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]