PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7D6EJ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 460aa    MW: 52518.3 Da    PI: 9.2185
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7D6EJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.36.1e-1438117891
         FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  k vGFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.7D6EJ  38 KAVGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTVGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 117
                  789*******98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1138117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDDSTLDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVSKAV GFSTRVRSTN RKGNEIKNQL  60
ITCSREGKWK SKISPTEKTN PTVGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA  120
EMLKQHRELS MSIRRTIENN EEADRHIWVP IYLDHHFWAG MISTQRSERM HSFFNKFITR  180
NSSLIQFVKQ YDNCLGSREQ AERESDAADF HTVIPCATKS SIEAQFQDVY THQKFREVQA  240
QFKGKANYIT RLTNSALGYS VYEVGEQVSS SIFNKFVVTY DSVAAESRGI LCRHALSVLS  300
FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLLEPRK QEELTAILYR AYDNVMAEME  360
SLKVKRKGTS LSHEDANLES VNELQSPPRI RTRGRPKNRL GSKLDKQIAN ATKKKKTKVL  420
SEINLFDAAS VVHSNSSQYQ GHVMNYQFRV PGAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7D6EJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZZ110.0A0A444ZZ11_ARAHY; Uncharacterized protein
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-22far-red elongated hypocotyls 3