PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.77ISR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28926.3 Da PI: 8.6772 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.8 | 1.8e-31 | 10 | 88 | 52 | 129 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++e+vg++ktLvfyk+rap+g kt W+mhe+rle Araip.77ISR 10 KLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPlTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 88 44678**************************************999999***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.564 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.81E-39 | 8 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-15 | 15 | 87 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRTLHTEVAK LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPLTREVVG 60 MRKTLVFYKN RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKTD NSAKLSPQFM 120 YEATPSSLTL ASSSSSPPTN QTNCNNLHVI GYNQLPNFSS SSSPMAIHHN HHHHHHHQNQ 180 NGSSSLMNLL QFSTKENSTI TQLSPKGGGG GGGGDDGGYG FMWDMDLEEN SFHDGGVIAS 240 NLNDMRFEVD NNTMVML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-27 | 9 | 106 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-27 | 9 | 106 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-27 | 9 | 106 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-27 | 9 | 106 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-27 | 9 | 106 | 69 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-27 | 9 | 106 | 66 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-27 | 9 | 106 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.77ISR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016183051.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Refseq | XP_025632451.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A445EG49 | 1e-143 | A0A445EG49_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G18620.2 | 1e-116 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-63 | NAC domain containing protein 74 |