PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.73BCB

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 959aa MW: 106754 Da PI: 5.1947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.73BCB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	589	639	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Araip.73BCB 589 EKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKV 639 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	571	659	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-27	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-18	786	874	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-21	788	871	No hit	No description
PROSITE profile	PS51745	18.025	791	873	IPR000270	PB1 domain
SMART	SM00666	2.0E-14	791	873	IPR000270	PB1 domain
Pfam	PF00564	8.1E-13	792	872	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.7E-20	872	954	No hit	No description
SuperFamily	SSF54277	1.14E-17	872	956	No hit	No description
PROSITE profile	PS51745	16.597	875	957	IPR000270	PB1 domain
SMART	SM00666	1.6E-13	875	957	IPR000270	PB1 domain
Pfam	PF00564	4.5E-13	878	955	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MEDQFFSEGE GIGYWTPPGA QFDGPSMIDN GIKNLVSEEK LDNLPDLMNF DNLAGWGNIP 60 SVTDHNLDNG ISSLASMPYS PPDAYSLVEQ ANDPYFMTKD CGNYNAIETS LGFDEKAVLQ 120 QLETQLGLSE DANDMNNING SLQELSAADM GNCLVPRPFA WSLDEKMLRA MNLFKESVGD 180 GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRE FTFSAEDKPG SFPGLPGRVF 240 MSQIPEWTSN VGYYNKSEYL RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKP 300 DFDKELEIVS SALQLVNLRT TTSPRLMSQC LSNNKRAALT EIIDVLRAVC HAHSLPLALT 360 WIPCYYSEGI GDEASRIRIK DGGKIPGEKT VLCIEESACY INDIVVGGFV HACVEHYLEE 420 GQGVAGKALQ LNRPFFYSDV KAYNISEYPL VHHARKYKLN AAVAVRLRSI HTNDDDYMIE 480 FFLPVNMNGS QEQQLLLDNL SGTMQRMCQS LRTVSDAKLY GIEGSQVQFS KEEGSSFCSM 540 SRGNSHMAPD GDHDSVQPMS VTNNETEAAH NQAMDGSRKQ IEKKKSPVEK NVSLSVLQQY 600 FSGSLKDAAK SLGVCPTTLK RICRQHGIAR WPSRKINKVN HSLKKIQTVL DSVQGVEGGL 660 KFDPYKGGFM PGGSSNQEIN AHKSSLFWKK CSGKFPDPAS KDAVTVSPAS GSKDSKPIAM 720 DDGGLRQEPF RVSILESSRC DIAYHSPNTL GEHHNPTTSS MSDSSNGSGS RKFENRKHLK 780 AKSPCLDKGS KISVKAAYKE DMIRFKFDPA AGCLQLYEEV ATRFKLRIGS FQLKYLDDED 840 EWMMMVNDSD VEECIEILDD LGTRAVKFLV KHGSKIIVKA AYKEDMIRFK FDPAAGCLQL 900 YEQVATRFKL QIGSFQLKYL DDEEKWVMMV NDSDLEEFIE ISDDLRTRAV KFLVSDLVV

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MEDQFFSEGE GIGYWTPPGA QFDGPSMIDN GIKNLVSEEK LDNLPDLMNF DNLAGWGNIP  60
SVTDHNLDNG ISSLASMPYS PPDAYSLVEQ ANDPYFMTKD CGNYNAIETS LGFDEKAVLQ  120
QLETQLGLSE DANDMNNING SLQELSAADM GNCLVPRPFA WSLDEKMLRA MNLFKESVGD  180
GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRE FTFSAEDKPG SFPGLPGRVF  240
MSQIPEWTSN VGYYNKSEYL RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKP  300
DFDKELEIVS SALQLVNLRT TTSPRLMSQC LSNNKRAALT EIIDVLRAVC HAHSLPLALT  360
WIPCYYSEGI GDEASRIRIK DGGKIPGEKT VLCIEESACY INDIVVGGFV HACVEHYLEE  420
GQGVAGKALQ LNRPFFYSDV KAYNISEYPL VHHARKYKLN AAVAVRLRSI HTNDDDYMIE  480
FFLPVNMNGS QEQQLLLDNL SGTMQRMCQS LRTVSDAKLY GIEGSQVQFS KEEGSSFCSM  540
SRGNSHMAPD GDHDSVQPMS VTNNETEAAH NQAMDGSRKQ IEKKKSPVEK NVSLSVLQQY  600
FSGSLKDAAK SLGVCPTTLK RICRQHGIAR WPSRKINKVN HSLKKIQTVL DSVQGVEGGL  660
KFDPYKGGFM PGGSSNQEIN AHKSSLFWKK CSGKFPDPAS KDAVTVSPAS GSKDSKPIAM  720
DDGGLRQEPF RVSILESSRC DIAYHSPNTL GEHHNPTTSS MSDSSNGSGS RKFENRKHLK  780
AKSPCLDKGS KISVKAAYKE DMIRFKFDPA AGCLQLYEEV ATRFKLRIGS FQLKYLDDED  840
EWMMMVNDSD VEECIEILDD LGTRAVKFLV KHGSKIIVKA AYKEDMIRFK FDPAAGCLQL  900
YEQVATRFKL QIGSFQLKYL DDEEKWVMMV NDSDLEEFIE ISDDLRTRAV KFLVSDLVV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.73BCB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020970712.1	0.0	protein NLP8 isoform X1
Refseq	XP_020970713.1	0.0	protein NLP8 isoform X1
Refseq	XP_020970714.1	0.0	protein NLP8 isoform X1
Refseq	XP_020970715.1	0.0	protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A444X8S8	0.0	A0A444X8S8_ARAHY; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]