PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.70T8A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YB
Protein Properties Length: 176aa    MW: 19188.8 Da    PI: 6.7492
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.70T8AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.76.8e-4825113298
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                  reqdrflPian+srimkk+lPan+ki+kdaketvqecvs        easdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+eg++k
  Araip.70T8A  25 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVS--------EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 113
                  89***********************************97........6**********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-4321127IPR009072Histone-fold
SuperFamilySSF471133.81E-3327122IPR009072Histone-fold
PfamPF008085.8E-183086IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-115068No hitNo description
PRINTSPR006151.6E-116987No hitNo description
PRINTSPR006151.6E-1188106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MADGPASPGG GSHESGDHSP RSNIREQDRF LPIANISRIM KKALPANGKI AKDAKETVQE  60
CVSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIDPLKI YLTRYREMEG DTKGSAKGGD  120
ASAKKEVQPS PNVQLAHQGS FSQGVNYTNP QVILLCIMLY TVFFCASALS CTLVEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-3823107597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.70T8A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-44AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207962.11e-107nuclear transcription factor Y subunit B-10
RefseqXP_020960034.11e-107nuclear transcription factor Y subunit B-10
RefseqXP_025663652.11e-107nuclear transcription factor Y subunit B-10
SwissprotQ8VYK44e-73NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLV7CX891e-103V7CX89_PHAVU; Uncharacterized protein (Fragment)
TrEMBLV7CZA71e-103V7CZA7_PHAVU; Uncharacterized protein
STRINGXP_007162720.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-75nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]