PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6YN77
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 613aa    MW: 66769.6 Da    PI: 7.0398
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6YN77genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.4e-24269313145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Araip.6YN77 269 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 313
                  79****************************************985 PP
2QLQ61.32.6e-21199234237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  Araip.6YN77 199 LFTPSQWMELEHQALIYKYITANVPVPSHLLIPIRK 234
                  6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-12198234IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.788199234IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-15200233IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847269313IPR014977WRC domain
PfamPF088791.2E-20270312IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDLGVVGFDG LVGSEAGFVP FGSGFLKHQR SEQEEEVSNI NDHNNRRGAK LSKVNITSGD  60
DDHDDVITTT TSKGMLFFQN HQRNNNNNSS CCNVLLRSNN NNNNNNGNDN VAIALFNDGG  120
EEQEGEEKML SFSTTPTPKS ESLIVEKASS NATLHTSYHP FSSYNINNAG YNNSNWGMNV  180
NVNMNMMNNN VGRVVGAALF TPSQWMELEH QALIYKYITA NVPVPSHLLI PIRKALHSTS  240
PFSNFPNPLL RPNPLGWGGF HLGFSSSTDP EPGRCRRTDG KKWRCSRDAV VDQKYCERHM  300
NRGRHRSRKP VEGQSGHAAA VTTTTTTTTT TSNSKLLLPN SNNSSSSFSI VGNTASNNNS  360
NTISFGNCHE HKNVIQQQQP VASDASAANN ISRMFMKKEN NNANESCSSL LPMLPPNLDL  420
KPKENPFMIH NNNHEFGVVT CDSLLNPSSN NKSNDSQNNS LRHFIDESTQ LSISIPNHQF  480
MPTNEKVTLS PLRVSSSREL ELELVDPIQM GLGVGIGVNN NIVRQPNWIP ISWESSMGGP  540
LGEVLNLNNN NNSNNNNKGS MNLISSDGWD NSPSIGSSPT GVLQKTTAFG SLSNSSAGSS  600
PRAADNNKGG AIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6YN77
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016162978.10.0growth-regulating factor 1
RefseqXP_025660185.10.0growth-regulating factor 1
TrEMBLA0A445CXM90.0A0A445CXM9_ARAHY; Uncharacterized protein
STRINGGLYMA17G35090.21e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-60growth-regulating factor 2