PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.6VT6V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 465aa MW: 52338.9 Da PI: 7.4978

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.6VT6V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.1e-19	105	193	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y eYAk +GF +rk s k ++g+++++ f+C+++g +e+++ + ++++r ++aetrt+C ak+ v ++k gkw+ + ++++HnH+l+ Araip.6VT6V 105 YVEYAKATGFAIRKGDSIKD-DEGNVVRKFFYCNRQGLQEKKHYErADRKRAHKAETRTNCSAKFIVFLDKqCGKWRTKIFVQDHNHDLT 193 99************9998.7788**********99988857888889**********999989************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-18	105	193	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.62	272	308	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-4	283	310	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDSGSEGNSD FSGQWTDGWS SESEEEEEEV SKGLESPSRV GKDNEPVERV DVFGEGDNGG 60 RMPSSESPRG SGDQMSDDVD TSMLSTAAAL ADAEFHGVEE AYARYVEYAK ATGFAIRKGD 120 SIKDDEGNVV RKFFYCNRQG LQEKKHYERA DRKRAHKAET RTNCSAKFIV FLDKQCGKWR 180 TKIFVQDHNH DLTLPAFTNV MAAHRNINEE PVITTGLESI ERAMSQIYTR EIFFEVKKQI 240 EGVAALIVLH RESYGSTEKF MFRKFRKPRR VYSVLYESNS ERYECSCKLW NSIEIPCSHI 300 ICVLKELEKD ALPMRLVLKR WCKNAKSGSF HDSDGGLDSN RAFRGRYGSL WTSFLPMCLL 360 AAQRPATYKY AAAKIAQLLK EIEAEVSKGN SSTFVHDTVD GEDILDPKII KSKGAPRSTG 420 NGKMARRCKR GHGFGHDRRN CTANKEDMLD EVSVKFKVAI GSVTV

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDSGSEGNSD FSGQWTDGWS SESEEEEEEV SKGLESPSRV GKDNEPVERV DVFGEGDNGG  60
RMPSSESPRG SGDQMSDDVD TSMLSTAAAL ADAEFHGVEE AYARYVEYAK ATGFAIRKGD  120
SIKDDEGNVV RKFFYCNRQG LQEKKHYERA DRKRAHKAET RTNCSAKFIV FLDKQCGKWR  180
TKIFVQDHNH DLTLPAFTNV MAAHRNINEE PVITTGLESI ERAMSQIYTR EIFFEVKKQI  240
EGVAALIVLH RESYGSTEKF MFRKFRKPRR VYSVLYESNS ERYECSCKLW NSIEIPCSHI  300
ICVLKELEKD ALPMRLVLKR WCKNAKSGSF HDSDGGLDSN RAFRGRYGSL WTSFLPMCLL  360
AAQRPATYKY AAAKIAQLLK EIEAEVSKGN SSTFVHDTVD GEDILDPKII KSKGAPRSTG  420
NGKMARRCKR GHGFGHDRRN CTANKEDMLD EVSVKFKVAI GSVTV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.6VT6V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177949.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025684799.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444X116	0.0	A0A444X116_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19132	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-11	FAR1-related sequence 5