PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6SI7V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family G2-like
Protein Properties Length: 398aa    MW: 44313.2 Da    PI: 8.3937
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6SI7VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.4e-3351105155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Araip.6SI7V  51 KPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 105
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.81248108IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-3149106IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1650106IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-2351106IPR006447Myb domain, plants
PfamPF002497.8E-1053104IPR001005SANT/Myb domain
PfamPF143792.1E-23163209IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
GGRMYHHHHQ GKNIHSSSSR MAMSSERHMF LQAAGNGSGG DSGLVLSTDA KPRLKWTPDL  60
HARFIEAVHQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QKYRLSKNLQ GQSNNNVPHK  120
ISASSVSTGE RPSESNGTHN HMNNNTLNTI PSSPQSSNNK DLHISEALQM QIEVQRRLNE  180
QLEVQRHMQV RIEAQGKYLQ AVLEKAQETL GKQDLGVVGL EAAKVQLSEL VSKVSSQCLE  240
LQTNNNHLPN NNNNDCSMDS NSCLTSEQEN LRPFINGHHH KFMLERNTTT ATTNFLTPLG  300
SKNNNSNSAE RRSYVVERSP SNLSMSIGLE RETEAAMMMS NEKGSHHHHH HHHQDYTLPP  360
SSYFSAPRLD LNARDQDQSH EATAATCKQL DLNGFSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6SI7V
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935521e-64BT093552.1 Soybean clone JCVI-FLGm-24O19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187575.10.0myb-related protein 2-like isoform X2
RefseqXP_025641599.10.0myb-related protein 2 isoform X2
SwissprotQ9SQQ91e-104PHL9_ARATH; Myb-related protein 2
TrEMBLA0A445AAH30.0A0A445AAH3_ARAHY; Uncharacterized protein
STRINGGLYMA12G31020.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-92G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]