PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.6S5NP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25005.2 Da PI: 6.3694 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 28 | 77 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L +l + + + Ka+iL ++ + +k+L Araip.6S5NP 28 KRIHKAEREKMKREHLNELFLDLANVLDLN----EQNNGKASILNETARLLKDL 77 688899*******************99886....78899999****99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.31E-5 | 25 | 82 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-11 | 25 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-6 | 27 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.899 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGSENQTPMT ETSKNRSSGK TNQGKVPKRI HKAEREKMKR EHLNELFLDL ANVLDLNEQN 60 NGKASILNET ARLLKDLLCQ IESLKKENSS LLSESHYVTM EKNELKEETA SLETQIEKLQ 120 VEIQARVTQS KPDLNAPPHV EIEPPEQANF TGQSLQFPPM EPNLQQGPAV FVVPYRPGFQ 180 AAFSAPTVAE VTPKPSSAIS KPHARYPTPA DSWPSLLLGQ QPTSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.6S5NP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016192454.1 | 1e-164 | transcription factor bHLH47 | ||||
Refseq | XP_025629305.1 | 1e-164 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 2e-58 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A445AZW5 | 1e-163 | A0A445AZW5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004508752.1 | 1e-126 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-51 | bHLH family protein |