PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6NM80
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 172aa    MW: 20085.3 Da    PI: 9.1672
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6NM80genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.76.5e-0749905191
         FAR1 51 errtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 +  t+++ + +C a++ v+ +k  g w + k++l+H+H+++p
  Araip.6NM80 49 QLITNPSAELNCPARIYVHIMKdIGLWTIFKVVLNHSHPCCP 90
                 45589999*************989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-54690IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDEKFVPKVG MIFKTLEEAR KFYKHYSKLT SFSTKIRNTT RDGDKIKNQL ITNPSAELNC  60
PARIYVHIMK DIGLWTIFKV VLNHSHPCCP SQAEMLKQHR ELTMFVHHTI ETHEKAGIRP  120
SKTYQSFVVA AGSHRELACT VFGSPHLMGL VWFVELYEDR HIWISVYLDH HF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6NM80
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016195668.12e-74protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_016195732.15e-75protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025647866.12e-74protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_029145717.16e-77protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AFM31e-90A0A445AFM3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.13e-07FAR1-related sequence 4