PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6I3DS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 541aa    MW: 60744.6 Da    PI: 6.2582
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6I3DSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4562.4e-1391715411374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s++y+al+++e +   s+e l+++++++ev+P++kf+++ a
  Araip.6I3DS 171 LKHVLVVCAKAIAENDLLMAQRLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYRALRCKEPE---SAELLSYMHILYEVCPYFKFGYMSA 265
                  6899*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  d++l++L
  Araip.6I3DS 266 NGAIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGKRLSKLAEHFKVPFEFHA-AAISGCDVQLHNL 362
                  ***************************************************998899999************************.88899******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v+pgEalaVn++++lh+++desvs+ ++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++eri+vE+++l+r
  Araip.6I3DS 363 GVRPGEALAVNFAFMLHHMPDESVSTLNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLAR 460
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll +++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Araip.6I3DS 461 DLVNIIACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLDNYSDR-YRLEERDGALYLGWMNRDLVASCAWK 541
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.028145522IPR005202Transcription factor GRAS
PfamPF035148.2E-137171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MQASEHHRSS SMYYQPMQQV EAYCMPQYQA LNHHQYYNDG GHGIGSRFSN QSSSEIYCTL  60
ESSSATGSFN VYNSPSTVSF SPNGSPVSLQ DSQSQSYPPD NNYGSPMSGS CITDDLSTFK  120
HKLRELESVM FGPDCDNLDS YDSSFKDATD FMSSEMDSWR QTMVAISCKN LKHVLVVCAK  180
AIAENDLLMA QRLMDELRQM VSVSGEPIQR LGAYMLEGLV ARLSSSGSSI YRALRCKEPE  240
SAELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQISQGS QWITLIQAFA  300
ARPGGPPHIR ITGIDDSTSA YARGGGLHIV GKRLSKLAEH FKVPFEFHAA AISGCDVQLH  360
NLGVRPGEAL AVNFAFMLHH MPDESVSTLN HRDRLLRLVK SLSPKVVTLV EQESNTNTAA  420
FFPRFLETMD YYTAMFESID VTLPREHKER INVEQHCLAR DLVNIIACEG VERVERHEVL  480
GKWRSRFAMA GFSPYPLSSL VNGTIKKLLD NYSDRYRLEE RDGALYLGWM NRDLVASCAW  540
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6217854026378Protein SCARECROW
5b3h_A1e-6217854025377Protein SCARECROW
5b3h_D1e-6217854025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6I3DS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166585.10.0scarecrow-like transcription factor PAT1
RefseqXP_020962487.10.0scarecrow-like transcription factor PAT1
RefseqXP_025665647.10.0scarecrow-like transcription factor PAT1
RefseqXP_029150352.10.0scarecrow-like transcription factor PAT1
RefseqXP_029150353.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A445C2S40.0A0A445C2S4_ARAHY; Uncharacterized protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]