PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6CZ8C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 413aa    MW: 45538.9 Da    PI: 7.549
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6CZ8CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.3e-07442537
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  C+ +++k + lfC+ ++  lC +C ++ H+       H
  Araip.6CZ8C  4 PCDYCDSKTAVLFCRADSAKLCISCDQHVHSAnalslkH 42
                 6***************************99655566666 PP
2zf-B_box25.82.2e-084586337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                  ++C+++ ++++   C +++  lC+dC +  H++       H
  Araip.6CZ8C 45 SQICDNCRNEPAAVRCATDNLVLCNDCDSDAHNSssvaislH 86
                 689*****************************8777777773 PP
3CCT661e-22361404144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Araip.6CZ8C 361 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 404
                  6789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
SMARTSM003368.8E-9147IPR000315B-box-type zinc finger
PfamPF006432.9E-5444IPR000315B-box-type zinc finger
CDDcd000211.15E-7435No hitNo description
PROSITE profilePS501199.3574394IPR000315B-box-type zinc finger
PfamPF006434.9E-64589IPR000315B-box-type zinc finger
CDDcd000213.07E-64776No hitNo description
SMARTSM003360.844885IPR000315B-box-type zinc finger
PROSITE profilePS5101714.842361403IPR010402CCT domain
PfamPF062031.6E-16361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLLPCDYCDS KTAVLFCRAD SAKLCISCDQ HVHSANALSL KHVRSQICDN CRNEPAAVRC  60
ATDNLVLCND CDSDAHNSSS VAISLHARHR LHGFSGCPPA LEIAAALGIE LKFNSNCNGG  120
SGNTSGFDEI KGPVVPIVKD KVYEQVLEMA RRNGTAADRN EEVEAGLCPD TPPCVQGAEE  180
KGELNTCNSF SNNKRSANRN NNNKNNDDEL LMEQTPFTSL LMLPSDGGSV KRNDCGSEGD  240
LLWNNCNPAY QPPQSMVTPM IAKIGMGFSV TKIKRYINSS TIDDILSRNN QSDQSSSNHV  300
MKNEESNKKP RGGLSSESKL VEPITYSSTN NAAYMEHLVS GSENVSTIKD KVNFEELTKN  360
RGDAMLRYKE KKKTRRYDKH IRYESRKARA DTRKRVKGRF VKASDASDVQ NEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6CZ8C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025658699.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A444YSD90.0A0A444YSD9_ARAHY; Uncharacterized protein
STRINGXP_004493006.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-40B-box type zinc finger protein with CCT domain