PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.686TC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-X1
Protein Properties Length: 847aa    MW: 95080.1 Da    PI: 8.4721
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.686TCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.16.9e-07207225119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG H C ++CH+G+CppC+
  Araip.686TC 207 CGVHGCAEICHKGQCPPCR 225
                  ******************8 PP
2zf-NF-X120.31.2e-06367386120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C+++C+ G+CppC++
  Araip.686TC 367 CGRHACKRKCCDGDCPPCSE 386
                  ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.36E-541115No hitNo description
PROSITE patternPS01359043109IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.61E-6143191No hitNo description
PfamPF014220.068155172IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072155173IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-9197243No hitNo description
PfamPF014222.6E-4207225IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011207226IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-8250297No hitNo description
PfamPF014220.018260278IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0011260279IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-8304353No hitNo description
SMARTSM004381.4314334IPR000967Zinc finger, NF-X1-type
PfamPF014221.4316333IPR000967Zinc finger, NF-X1-type
CDDcd060081.55E-8357405No hitNo description
PfamPF014224.1E-4367385IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0036367386IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-10384432No hitNo description
PfamPF014220.015394412IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018394413IPR000967Zinc finger, NF-X1-type
SMARTSM0043861451472IPR000967Zinc finger, NF-X1-type
PfamPF014224.6461471IPR000967Zinc finger, NF-X1-type
PfamPF0142224480490IPR000967Zinc finger, NF-X1-type
SMARTSM00438190480525IPR000967Zinc finger, NF-X1-type
PfamPF014220.14554564IPR000967Zinc finger, NF-X1-type
SMARTSM004385.3554586IPR000967Zinc finger, NF-X1-type
CDDcd060083.81E-5584625No hitNo description
SMARTSM004380.016596614IPR000967Zinc finger, NF-X1-type
PfamPF014220.015597613IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2659680IPR000967Zinc finger, NF-X1-type
PfamPF01422150660678IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
ASIFKPYFEF TGRHSSSATT ATPAEVSKIQ SFLTSSSSGA LSCLICLERI KPSDPTWSCS  60
SLCFALFHLH CIQSWARQAS NLAAARAATR LPITEQRASE TALWNCPKCR VEYPITHIPK  120
TYFCFCGKLE NPPNDPWVLP HSCGEICGRP LKHNCGHHCL LLCHPGPCPS CPKLVKVSCF  180
CTKIEDVRRC GFKEFSCGKV CGKVLDCGVH GCAEICHKGQ CPPCRARSVY QCRCGKKKEE  240
RECCNRVFRC GEPCEKRLGC GRHVCERGCH VGECGDCPLQ GKRACPCGKR VYEGMPCDVT  300
VPLCGATCDK MLSCRYHRCP ERCHRGACVE TCRTVVKKSC RCGSLRKDVP CYQDLWCERK  360
CQRMRDCGRH ACKRKCCDGD CPPCSEVCDR RLRCKNHKCP SPCHRGACAP CPIMVTISCA  420
CGETHFEVPC GTEMEQKPPK CPKPCPIAPL CHHAPKLKPH KCHYGACPPC RLPCAEEYSC  480
GHACKLRCHD AKPPPNREFT LKPKKKKIIQ QSECTPGTPC PPCPELVWRP CVGQHIGAER  540
MFACENLCGN PLPCGNHYCT KTCHALENSA STNRLQKSEP CEDCSLPCDK EREPKCQHRC  600
PRRCHPGDCP PCKVLIKRSC HCGSMVHVFE CIYYNTLSAK DQEKVRSCGG LCHRKLPNCT  660
HLCPETCHPG ECPNPEKCSK KVTVRCKCQT LKREWPCHDV QAAYHSAGSH PKDITKNQFG  720
IGLIPCNSDC KSKMQVVESE LHLRKSQVTE VKETDNEKLA PKRRKRQKRV QESKEATKLQ  780
RSSFFPCSNY VSWSLSTDHL LFLLITEQKI ISTTKKLLLY LFILIILVTA TYYGYKGLLW  840
LNDWMNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1760767PKRRKRQK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.686TC
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357521e-50AC235752.3 Medicago truncatula clone mth2-93d23, complete sequence.
GenBankCR3822791e-50CR382279.1 M.truncatula DNA sequence from clone MTH2-15G18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025622920.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A445B7Y30.0A0A445B7Y3_ARAHY; Uncharacterized protein
STRINGXP_004500492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors