PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.64TUX

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 513aa MW: 58883.6 Da PI: 9.1427

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.64TUX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.4e-16	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++ +++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ k + w ++k++l+H+H+++p Araip.64TUX 51 KFYRNYAKAAGFSTRVRSINRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVSAWIISKVVLDHSHPCCP 137 6**************99887..8889*******99998776...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-14	51	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDDSSSDCQL NQGEVNYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAR KFYRNYAKAA 60 GFSTRVRSIN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVS 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF 300 VVTYDSVVAE VKCQCLLFES RGILSRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI 360 KSSHDEPLLE PRSKRFDQLV FRSQNICEFV SELEELTAIL HRAYDNVMAE MESLKAKRKG 420 TFSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD 480 AASVVHSNSS QYQGHVMNYQ FRVPGAGDNS LAV

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDDSSSDCQL NQGEVNYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAR KFYRNYAKAA  60
GFSTRVRSIN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVS  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR KVQAQFRGKA NCITRLTNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVVAE VKCQCLLFES RGILSRHALS VLSFERVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLE PRSKRFDQLV FRSQNICEFV SELEELTAIL HRAYDNVMAE MESLKAKRKG  420
TFSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD  480
AASVVHSNSS QYQGHVMNYQ FRVPGAGDNS LAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.64TUX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444ZZ11	0.0	A0A444ZZ11_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-33	far-red elongated hypocotyls 3