PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.609WS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 41082.7 Da PI: 7.7539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.5e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL++kv+++ ++ ++i+ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ +g Araip.609WS 5 LPPGFRFHPTDEELITYYLTRKVSENGFTS-KAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFR-GGV 100 79*************************999.88***************988999****************************************.*** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrap+gek++Wvmheyrle Araip.609WS 101 LVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-64 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.701 | 5 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLTRKVSEN GFTSKAIAVV DLNKSEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENKNPFRTKD EWVVCRVFQK STAAKKPPQQ TSSSQPESPC DDTTSLVNEF 180 GDVIEFPNLN TNINNTNNNN NNSSSSSSSA LFPNNILISG QHIHHHHDLT NNNNNNNVNT 240 NMNLAMNWPP SSDHNVPWPS VGLLNPSISS MNSLILKALQ LRNNYQQREV ASTFAPSSYI 300 MPHHQGVVVP HQQVIIGTNN DDLITTSSNL INASSSSSSK VLECMPHQQQ QQQEQPFNLD 360 SLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-58 | 4 | 156 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-58 | 4 | 156 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-58 | 4 | 156 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-58 | 4 | 156 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-58 | 4 | 156 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-58 | 4 | 156 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-58 | 4 | 156 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.609WS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016203627.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 isoform X1 | ||||
Refseq | XP_025655954.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 isoform X1 | ||||
TrEMBL | A0A444Z0D4 | 0.0 | A0A444Z0D4_ARAHY; Uncharacterized protein | ||||
STRING | AES76698 | 1e-162 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-103 | NAC domain containing protein 58 |