PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.5W5BP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10621.2 Da PI: 9.638 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+++ + +G+g +W + +r+ g++R++k+c++rw++yl Araip.5W5BP 14 RGPWSPDEDATLKNYLHTHGTGgNWIALPRKAGLRRCGKSCRLRWLNYL 62 89**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.815 | 9 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 12 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-20 | 15 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-8 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 62 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPD EDATLKNYLH THGTGGNWIA LPRKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEQEDQIIC TLYTQMGSRQ VYL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.5W5BP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945113.1 | 6e-63 | transcription factor RAX2-like | ||||
Swissprot | Q9M2Y9 | 2e-51 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A445CXD8 | 5e-64 | A0A445CXD8_ARAHY; Uncharacterized protein | ||||
STRING | POPTR_0006s25060.1 | 5e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 3e-54 | myb domain protein 68 |
Publications ? help Back to Top | |||
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