PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5L08V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-PHD
Protein Properties Length: 645aa    MW: 73067 Da    PI: 8.8736
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5L08VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-09439484954
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +e +e L ++F++n  p ++++  L+k+lgL+ ++V  WF+N R+ 
  Araip.5L08V 439 REAVEKLRQVFAENELPPRSTKLALSKELGLDIEKVNKWFKNARYS 484
                  68899***************************************85 PP
2PHD33.78.3e-12175229150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ C+   +  +++++ Cd +C+++fH kCl++ l++e++p g   wlC+ C +
  Araip.5L08V 175 YCQKCNLreALRDKDIIRCDgTCNRTFHKKCLDPALDTENIPPGehGWLCKFCGC 229
                  799999954455********56********************9999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.107.9E-10166231IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.88E-11167232IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS5001610.22173230IPR019787Zinc finger, PHD-finger
CDDcd155041.94E-21175227No hitNo description
SMARTSM002493.1E-6175228IPR001965Zinc finger, PHD-type
PfamPF006288.1E-9175229IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590176227IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.1E-12417482IPR009057Homeodomain-like
SMARTSM003893.7E-8428492IPR001356Homeobox domain
PROSITE profilePS5007111.953428488IPR001356Homeobox domain
CDDcd000861.34E-7431492No hitNo description
SuperFamilySSF466891.15E-10431495IPR009057Homeodomain-like
PfamPF000464.8E-7439484IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MRDGKKSNNR GLQKSIHPKA KTESKLNSSL RVKSKSTKCQ GKKHKLKPKS HMQRNASNMS  60
RKRATDPSIK GPNKEPSKKK LIIRFSLHET DDKSSKKLSS KLKGEKVSFR SKEEGKDVDG  120
KIRPEKELQR ARKQILKCKL SIRDAIHQLD SLSSLNNSED SVIVPDGSNC HEHKYCQKCN  180
LREALRDKDI IRCDGTCNRT FHKKCLDPAL DTENIPPGEH GWLCKFCGCK MEILGAMNAH  240
LGTHFSLHST WQDVFKEEAA KPDGDTALLN PEEEWPSDDS EDDDYDPERR EDCHNINTEG  300
SNDDASNNLS SSTSLCSSDG ECSLVDEGFN HEYSSLDGCI DSNESEDNVC GPRQRKTVDY  360
KQLYDEMFGK DAAACEQVSE DEDWGPTKRK RRDKESDAVD TLMTLHECQN RIHNSENINM  420
EREGSPSKQI KRSCFRIPRE AVEKLRQVFA ENELPPRSTK LALSKELGLD IEKVNKWFKN  480
ARYSALKSRK QHTEGADPPQ TSGSKDNRLQ DPERAEVSKP KASKNIINHS LKNGKAVNGR  540
KKRRSEVSPT QREKGDKELE ELSDDVCLMK LLKNKKKRLN SAFEGHSHTA ELEFEKLSKV  600
KAKLDNLRQK LTAILNYRAN ASNASHSNEP SIMYVPTAVL REKVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5L08V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201735.10.0pathogenesis-related homeodomain protein-like isoform X2
RefseqXP_025630808.10.0pathogenesis-related homeodomain protein
TrEMBLA0A445AUW70.0A0A445AUW7_ARAHY; Uncharacterized protein
STRINGXP_004487993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-109pathogenesis related homeodomain protein A