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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.5KN79 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 75aa MW: 9065.26 Da PI: 9.7272 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 38 | 73 | 4 | 40 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
WT +E++l+++++++lG+ W +I+++ k+Rt q+
Araip.5KN79 38 WTLQEHKLFLQGFEELGKQ-WLRISNEYVKTRTYTQV 73
*****************99.************98776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 11.096 | 30 | 75 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 8.97E-9 | 37 | 73 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 0.00322 | 38 | 73 | No hit | No description |
| Pfam | PF00249 | 3.5E-7 | 38 | 73 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 38 | 73 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 75 aa Download sequence Send to blast |
MSGAKREQNR HTNINIIQHE PLPMASNDNN ERKKIFHWTL QEHKLFLQGF EELGKQWLRI 60 SNEYVKTRTY TQVEL |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.5KN79 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025616409.1 | 6e-16 | uncharacterized protein LOC112708481 | ||||
| TrEMBL | A0A444YUQ5 | 3e-35 | A0A444YUQ5_ARAHY; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G74840.1 | 5e-12 | MYB_related family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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