PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.5E4N3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 403aa MW: 46799.1 Da PI: 8.9482 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.3 | 8.1e-16 | 11 | 97 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk++ Fs+r+++++++ + i+++ +Cs+e k +++ + +++t+++ +C a++ ++ k + w ++k++l+H+H+++p Araip.5E4N3 11 KFYRNYAKTASFSTRVRSKNRE--GNDIKNQLITCSRERKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVSAWIISKVVLDHSHPCCP 97 6****************98877..77799***********9998777...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-13 | 11 | 97 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.05 | 260 | 296 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.4E-5 | 261 | 293 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.9E-5 | 271 | 298 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MTFTTLEDAG KFYRNYAKTA SFSTRVRSKN REGNDIKNQL ITCSRERKWK SKISPTEKTN 60 PTAGLNCPAR IYIHTLKDVS AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN 120 EEADLYEDRH IWVPIYLDLH FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG 180 SREQAERESD AADFHTVIPC ATKSSVEAQF QDVYTHQKFR EVQAQFRGKV NCITRLMNSA 240 LGYSVYEVGE QVSSSIFNKF VVTYDSVVAE VKCQCLLFEL RGILCRHALS VLSFERVSQV 300 SPRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQFV FRSQNICEFA SESEELTAIL 360 HRAYDNVMAE MESFKAKRKG TYSLSHEDAN LESVNELQSP PKI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.5E4N3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A444ZZ11 | 0.0 | A0A444ZZ11_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445A1M9 | 0.0 | A0A445A1M9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445B3W8 | 0.0 | A0A445B3W8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 3e-35 | far-red elongated hypocotyls 3 |