PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.5E3CZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20426 Da PI: 8.4932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9.5e-06 | 55 | 94 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Araip.5E3CZ 55 IRKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 94 57788999*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-5 | 54 | 98 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-11 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0064 | 54 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-9 | 58 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MQHSTTSIPS QHFTNNNNGM MVETKRSSST LMESSNASKK SRPQSSRSSC QHLKIRKEKL 60 GDRIAALQQL VAPFGKTDTA SVLLEAIGYI KFLQSQVEDL HHGLIVTYTT DTKCSIYEVI 120 KEPNQQRTHN EARARDNIMN SEAKHEDLRS RGLCLVPMSC MAYIAGDDGG GCGAWQQPPN 180 FGGPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.5E3CZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025607307.1 | 1e-101 | transcription factor bHLH110 | ||||
Swissprot | Q9SFZ3 | 6e-37 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A444YGF3 | 4e-86 | A0A444YGF3_ARAHY; Uncharacterized protein | ||||
STRING | POPTR_0002s03380.1 | 4e-43 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 5e-35 | bHLH family protein |
Publications ? help Back to Top | |||
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