PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.5C6JK

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 854aa MW: 94141.2 Da PI: 5.789

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.5C6JK	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.6e-27	589	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg........vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lg +c+T+LKriCRq+GI+RWP+Rki+++ Araip.5C6JK 589 EKNVSLSVLQQYFSGSLKDAAKSLGgktttalsICPTTLKRICRQHGIARWPSRKINKV 647 79*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.869	571	667	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-24	591	647	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.2E-5	811	849	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MEDQFFSEGE GIGCWTPPGV QFDGPSMIDN GIKNLVSEEM LDNLPDLMNF DNLAGWGNIP 60 SVTDHNLDNG ISSLASMPYS PHDAFSLVEQ ANDPYFMTKD CGNYNAIETS LGFDEKVVLQ 120 QLETQLGLSE DANDMNNING SLQELSAADM GNCLVPRPFA WSLDEKILRA MNLFKESVGD 180 GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRE FTFSAEDKPG SFPGLPGRVF 240 MSQIPEWTSN VGYYNKSEYM RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKP 300 DFDKELEIVS SALQLVNLRT TTPPRLMSQC LSNNKRAALT GIIDVLRAVC HAHSLPLALT 360 WIPCYHSEGI GDEASRIRIK DGVKIPGEKT VLCIEESASY INDIVVGGFV HACVEHYLEE 420 GQGVAGKALQ SNRPFFYSDV KAYNISEYPL VHHARKYKLN AAVAVRLRST HTNDDDYIIE 480 FFLPVNMNGS QEQQLLLNNL SDTMQRMCQS LRTVSDAELY GIEGSQVQFS KEEGSSFCSM 540 SRGNSHMAPD GDHDSVQPMS LTNNETEAAH NQAMDGSRKQ IEKKKSPVEK NVSLSVLQQY 600 FSGSLKDAAK SLGGKTTTAL SICPTTLKRI CRQHGIARWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPYKGGFMPG GSSNQEINAH KSSLFRKKCS GKYPDPASKD AVTVSPASGG 720 KDSKPIGMDD GGLRQEPFLV SILESSRCDI AYHSPNTLVA DEMENYLNGA DKLGEHHNPT 780 TSSMSDSSNG SGSRKFENRK HLKAKSPCVD KGSKFIVKAA YKEDMIRFKF DPAAGCLQLY 840 EEVATRFSTM KRNG

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MEDQFFSEGE GIGCWTPPGV QFDGPSMIDN GIKNLVSEEM LDNLPDLMNF DNLAGWGNIP  60
SVTDHNLDNG ISSLASMPYS PHDAFSLVEQ ANDPYFMTKD CGNYNAIETS LGFDEKVVLQ  120
QLETQLGLSE DANDMNNING SLQELSAADM GNCLVPRPFA WSLDEKILRA MNLFKESVGD  180
GILTQVWAPM KHGNDFILST SEQPYLLDHM LAGYRDVSRE FTFSAEDKPG SFPGLPGRVF  240
MSQIPEWTSN VGYYNKSEYM RVEHAINHEV RGSIAVPIID TLAEPPCCAV LELVTTKEKP  300
DFDKELEIVS SALQLVNLRT TTPPRLMSQC LSNNKRAALT GIIDVLRAVC HAHSLPLALT  360
WIPCYHSEGI GDEASRIRIK DGVKIPGEKT VLCIEESASY INDIVVGGFV HACVEHYLEE  420
GQGVAGKALQ SNRPFFYSDV KAYNISEYPL VHHARKYKLN AAVAVRLRST HTNDDDYIIE  480
FFLPVNMNGS QEQQLLLNNL SDTMQRMCQS LRTVSDAELY GIEGSQVQFS KEEGSSFCSM  540
SRGNSHMAPD GDHDSVQPMS LTNNETEAAH NQAMDGSRKQ IEKKKSPVEK NVSLSVLQQY  600
FSGSLKDAAK SLGGKTTTAL SICPTTLKRI CRQHGIARWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKF DPYKGGFMPG GSSNQEINAH KSSLFRKKCS GKYPDPASKD AVTVSPASGG  720
KDSKPIGMDD GGLRQEPFLV SILESSRCDI AYHSPNTLVA DEMENYLNGA DKLGEHHNPT  780
TSSMSDSSNG SGSRKFENRK HLKAKSPCVD KGSKFIVKAA YKEDMIRFKF DPAAGCLQLY  840
EEVATRFSTM KRNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.5C6JK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016191518.2	0.0	LOW QUALITY PROTEIN: protein NLP8
TrEMBL	A0A445A9G3	0.0	A0A445A9G3_ARAHY; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein