PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5AF5M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 409aa    MW: 47405.4 Da    PI: 10.0353
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5AF5MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.82.6e-114672489
         FAR1 24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                 +++  +++   C++eg+re++ k+   + r +  t + C+a++ v +++ ++ w v++lel H+H++
  Araip.5AF5M  4 KSKIPINQSIHCTREGYRESRVKA---ATRANRITAMRCRARMYVMLDRkKKSWIVSRLELRHSHPC 67
                 5666789999***********999...8899999*************99899*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-8468IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.718240276IPR007527Zinc finger, SWIM-type
SMARTSM005757.4E-5251278IPR006564Zinc finger, PMZ-type
PfamPF044346.0E-5252275IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRKKSKIPIN QSIHCTREGY RESRVKAATR ANRITAMRCR ARMYVMLDRK KKSWIVSRLE  60
LRHSHPCSAK KAVHYHEYRE LTMHAKCVIT DNDEAGIRPN KTYLALFFKS GHHVVSKRHS  120
YALFFYVHLY ANRRKWVPIF FKSEFWAGMR STQWSESMHA FYGGFLHCKS GLVQFVHKYD  180
NVLVNKEQKE LEDDVTDSKG LEVSKKTDCV VRSTEQQGYS ISVKVDKQKI VWEKTVYRTF  240
TVDFDPLSQE VRCECNKFES TGILCCHTLA VFSYYRVDRE FITCDEEAAI LRSALWDGKS  300
KLTDYCASMR LTTVTATRNT MPTQSTSGVI VHDIWGPSRV ETKGQLKSKR LGAELDKSIK  360
KSMQKRKRKS HLTDNDYDGS IKKGFEASTT WNALDGGGFM SLLNSFEHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13750RCRARMYVMLDRKK
2366370KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5AF5M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025625396.11e-147protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445DIZ81e-153A0A445DIZ8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1363727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-14FAR1-related sequence 5