PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.531WS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 811aa MW: 88918.5 Da PI: 6.3998 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Araip.531WS 17 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 6789*****************************************************97 PP | |||||||
2 | START | 174.9 | 4.8e-55 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l + +g g+++l++++ Araip.531WS 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSIVPTGsgGTIELIYMQ 263 68999*****************************************************.8888888888***************************** PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 ++a+++l++ Rdf++vRy+ +l++g++vi+++S++s + p+ ss++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + Araip.531WS 264 TYAPTTLAAaRDFWTVRYTTSLEDGSLVICERSLTSSTGGPTgppSSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKIL 361 *************************************99999999***************************************************** PP HHHHHHHHTXXXX CS START 192 gaktwvatlqrqc 204 ++k + a+lq+ + Araip.531WS 362 AQKLTIAALQHIR 374 **********866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.742 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-16 | 14 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-16 | 17 | 77 | No hit | No description |
SuperFamily | SSF46689 | 1.24E-16 | 17 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-16 | 17 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.71E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 25.608 | 157 | 358 | IPR002913 | START domain |
CDD | cd08875 | 4.75E-70 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 9.6E-23 | 165 | 349 | IPR023393 | START-like domain |
SMART | SM00234 | 1.6E-51 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.08E-38 | 167 | 378 | No hit | No description |
Pfam | PF01852 | 1.6E-52 | 167 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 4.8E-26 | 710 | 807 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MALSMHKDAS NSMDSSKYVR YTPEQVEALE RVYAECPKPS SLRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYMKQQ 120 IHTASATTTT DNSCESVVMS GQNQQQQNPT PQHPQRDANN PAGLLAIAEE TLAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRPSWYRDC 240 RCLDVLSIVP TGSGGTIELI YMQTYAPTTL AAARDFWTVR YTTSLEDGSL VICERSLTSS 300 TGGPTGPPSS NFVRAEMLPS GYLIRPCEGG GSIIHIVDHV DLDVWSVPEV LRPLYESSKI 360 LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVEDGWSL 420 LGNDGVEDVT IAINSSPNKF LGSQYNSSMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAACLKA TPYAVPCARP GGFPSTQVIL PLAHTIEHEE VLILTLLSKS 540 LFLEVVRIEG HAFSPEDVAL ARDMYLLQLC SGVDENAIGA CAQLVFAPID ESFADDALLL 600 PSGFRVIPLD PKTDTPTTTR TLDLASTLEV GSGNTRAAGE ADDYNLRSVL TIAFQFTFEN 660 HLRDNVAAMA RQYVRSVVGS VQRVAMAIAP SRLSTQLGPK SLPGSPEALT LARWISRSYR 720 VHTGSDLFRV ESTAGDAILK QLWQHSDAIM CCSVKTNASP VFTFANQAGL DMLETTLVAL 780 QDIMLDKVLD ESGRKILCSE FSKIMQQVIN K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.531WS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015959291.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | A2XK30 | 0.0 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A444ZDS4 | 0.0 | A0A444ZDS4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004486450.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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