PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.52XKK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34924.7 Da PI: 4.5864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9e-08 | 184 | 228 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +r+RR+ri + + L +llP++ s a iL ++++k+Lq Araip.52XKK 184 KASDRQRRQRIADNLKALHDLLPNQ-----AEGSQAYILDDIIDHVKYLQ 228 7889********************6.....479****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.325 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.94E-7 | 179 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 183 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-10 | 183 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-5 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-5 | 184 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MESKMSFTSG GTSCHVTGSA AEDDSNMQDA VATEEGSGSQ WSFLPKPSHH NYVQYLTESS 60 NYLPKTEDMI GSNYAALGFG NDGNGTNMNF FCNDPGKAYA FKTEVHSSNE VDIGKQVGYW 120 RPAESEVQQE AMQFESTQHH HPLYPESPAS WTPEAIGDNP NVSRLDPSVL AGTPSFLPKP 180 ARQKASDRQR RQRIADNLKA LHDLLPNQAE GSQAYILDDI IDHVKYLQLQ LKELSGSRLQ 240 AESTAIPLVF HEGYGHYIDQ QKLNEPLEEM MGKLLEENPA SASQLLENNG LVLLPMELVQ 300 DLHQSMQIFG NGNALV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 190 | RQKASDRQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.52XKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020959374.1 | 0.0 | transcription factor bHLH7-like isoform X2 | ||||
Refseq | XP_025663535.1 | 0.0 | transcription factor bHLH7 isoform X2 | ||||
TrEMBL | A0A444YGU7 | 0.0 | A0A444YGU7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007144615.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 1e-20 | LJRHL1-like 2 |