PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4Z7UA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 424aa    MW: 45788.5 Da    PI: 6.8357
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4Z7UAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.12.6e-37281382102
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec.eaesssssasn 84 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++                     +  a++s++++++
  Araip.4Z7UA  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELpawkptattttvaaA------AaAASNSNVAVQQ 119
                  79**************************************************************555444433221110......1111111111111 PP

          TCP  85 sssgkaaksaa.kskksqk 102
                  ++ ++++++++ ++   ++
  Araip.4Z7UA 120 QKLREEEENQQlNQIVHRQ 138
                  1111111111112222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3428142IPR005333Transcription factor, TCP
PROSITE profilePS5136934.2953088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGETQHHRPT SSRLGMRAVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKAAIDELAE LPAWKPTATT TTVAAAAAAA SNSNVAVQQQ  120
KLREEEENQQ LNQIVHRQST TVDDAMEASG SRKATALVGG SGRISEFQPQ HLNDDNGSSG  180
KYNSGGSGFF PPTLDTDIAD TIKSFFPMVG PGEVATTTSS FHNYPPPPDL LSLLFAGTTA  240
LAFDGGSSGW SEQQHHQEEQ EHGRLQRMVA WNNAAADASS SGHASGFIFN SSATAAVPSP  300
AMFGHGQFFP QRGPLQSSNT PSFRAWIDPS SIATAAMTVD HHHYLSPAAI HQASIGFAGS  360
SSGSFSGFRI PARIQGAEEH DGMFDSEQQV KDQHWNGFSA AREFKMSLDF GCFDFNGSLS  420
MPWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-213588154Putative transcription factor PCF6
5zkt_B9e-213588154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4Z7UA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954009.20.0transcription factor TCP3
RefseqXP_020993698.10.0transcription factor TCP3
TrEMBLA0A445A3T20.0A0A445A3T2_ARAHY; Uncharacterized protein
STRINGXP_004510040.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-45TCP family protein