PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.4Y0Y0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 782aa MW: 86807.2 Da PI: 6.4723 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2e-23 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + Araip.4Y0Y0 157 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 250 99*****************************8544444..48************************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Araip.4Y0Y0 251 LLLGIRRA 258 9****997 PP | |||||||
2 | Auxin_resp | 121 | 9.1e-40 | 283 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Araip.4Y0Y0 283 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 366 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-49 | 141 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 150 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-21 | 156 | 257 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-21 | 157 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-24 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.4E-35 | 283 | 366 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MEILNNMLPT FLMQLVVVQL GGKRVKLDMK LSTSGLPQQG QHEGGEKKCL NSELWHACAG 60 PLVSLPTAGT RVVYFPQGHS EQVAATTNRE VDGHIPNYPS LPPQLICQLH NVTMHADVET 120 DEVYAQMTLQ PLTPQEQKDT FLPMELGVPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE 180 KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS 240 VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFYNPR 300 ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIS DLDPVRWPNS 360 HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSLFP LRLKRPWHPG TSSFLDGRDD 420 ATNGLMWLRG GAGDQGLNSL NFQTVGMLPW MQQRLDPALL GNDHNQQYQA MLAAGLQNMG 480 SGELLRQQMM NFQQPFNYLQ QPGNVNTPIQ LQQQQTIQQS VTSNILQQQA PLHQRQHSSL 540 PSPSYSKPEF VDGSMKFEGS GSPGQNMLGS LCPEGSSNLL NLSRGGQSIP TEQLPQQSWP 600 PKYTPLQVNA FSNSMSHVQY SGKDIAVASP HRNSDAQNPT LFGVNIDSSG LLLPTTVPHY 660 TTSSADTDAS TMPLGDSGFQ GPLYGCMQDS SELMQSAGQV DPQNQTPTFV KGKLEDPLRS 720 GWQLVFVDRE NDILLLGDDP WESFVNNVWY IKILSPEDIQ KMGEQAVESR DGVPGLPSIG 780 EY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 44 | 387 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 27 | LGGKRVKLD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.4Y0Y0 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020961526.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_025668805.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_025668806.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_029150040.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A444YC57 | 0.0 | A0A444YC57_ARAHY; Auxin response factor | ||||
STRING | GLYMA14G38940.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |