PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.4U4XR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 38522.4 Da PI: 4.6915 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 182 | 225 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Araip.4U4XR 182 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 225 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-15 | 178 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-12 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 182 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.76E-5 | 183 | 230 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 183 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00306 | 268 | 309 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MELSQLGFLE ELLLLAPRRV EETCWNNGFN DLLPTTPPPS ASVSASWSFD SLDDNPSLNP 60 SFSSFSTPLD HRFDSSYAAS FPFLDAFTIP PELHHSPPPL LPQQEHNNNN NNHPLVEEEE 120 EELGFLGNDD NNQSLEERNS GRCKVEEQQA LEVPAVVFNM GMCGEKKVPK SKKLEGQPSK 180 NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDTID YMKELLERIA KLQEETMEEE 240 GKNQIHLLGI SKELKPNEFD VERRDHDTRI SICCATKPGL LLSTVNTLEA LGLEIHQCVI 300 SGFNDFSMQA SCSEVAEERN CISTEDVKQA LFKNAGYGGR CV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 191 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.4U4XR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963319.1 | 0.0 | transcription factor bHLH93 | ||||
Refseq | XP_025651147.1 | 0.0 | transcription factor bHLH93-like | ||||
Refseq | XP_025697802.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 6e-80 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A444WVR9 | 0.0 | A0A444WVR9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G02390.1 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-81 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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