PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4M8U9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 746aa    MW: 82609.1 Da    PI: 6.0056
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4M8U9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.39.6e-172879556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++t+ q+  Le++   +++p++++r++LA+++g++ +qVk+WFqN+R++ k
  Araip.4M8U9 28 KRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIK 79
                 6799********************************************9988 PP
2START21.35.5e-08264363188
                  HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTE...EEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss.......esengde...vlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  e+a +a++el++++ ++ep+Wv s+        +e +++   ++++f ++++ ++e +++sg+v     +lv  +ld+  +W + ++    ka+tlev
  Araip.4M8U9 264 EVAATAMDELLRLIRLNEPFWVGSAfdgklvlHGESYEKmfpRVYQFNDGNS-RVESSKESGIVNISGIQLVDLFLDSE-KWVNAFPtivtKAQTLEV 359
                  58899********************999999955555541224667777777.****************9999999999.*******9999******9 PP

                  ECTT CS
        START  85 issg 88 
                   + g
  Araip.4M8U9 360 FEIG 363
                  8766 PP
3START55.12.4e-18374467114205
                  EEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE.EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
        START 114 yirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh.skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                   + ql+ g+w+i dvS ds ++ p   +  R+ ++pSg+li++++n   + vtw+ehv++++++  h l+r lv++ +a ga++w   lqr c 
  Araip.4M8U9 374 LCHQLEPGSWIITDVSFDSLRNYPFRLPRSRSWRRPSGCLIQELPNSTsCMVTWIEHVEVDDKIQtHRLYRDLVSTNAAYGAQRWIMELQRMCH 467
                  58899******************9999999******************999************999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-151062IPR009057Homeodomain-like
SuperFamilySSF466898.36E-161786IPR009057Homeodomain-like
CDDcd000865.02E-152182No hitNo description
PROSITE profilePS5007115.4832181IPR001356Homeobox domain
SMARTSM003897.8E-162385IPR001356Homeobox domain
PfamPF000463.3E-142779IPR001356Homeobox domain
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.605.8E-463108IPR009057Homeodomain-like
PROSITE profilePS5084826.907255471IPR002913START domain
CDDcd088751.83E-74260466No hitNo description
SuperFamilySSF559613.3E-17262466No hitNo description
PfamPF018521.5E-16264467IPR002913START domain
SMARTSM002341.5E-7264468IPR002913START domain
SuperFamilySSF559613.57E-11526665No hitNo description
SuperFamilySSF559613.57E-11695737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MSSSVTGAAG SGDDGRSSNN KGKRPAYKRL TSAQTAKLEK YIIDCPHPDE AQRRQLAEEV  60
GIEPKQVKFW FQNKRTQIKN QHERADNNAL RAENERIQNE NLLMKEALNN ILCPSCGGPP  120
AAGEDHEHFM QKMLLENAHL KEEASLNSFN TSSFQHVSHG KISNILSRYL EKEVLHPEDI  180
EQLNAIPNSI DIAGSSSTTP LYDFSVANGT LLNQQQGVSI NDVVAGPSSS LLHHQNYVPP  240
PIVADNNDNG EQGVAVMEVA LASEVAATAM DELLRLIRLN EPFWVGSAFD GKLVLHGESY  300
EKMFPRVYQF NDGNSRVESS KESGIVNISG IQLVDLFLDS EKWVNAFPTI VTKAQTLEVF  360
EIGLPESRSG ALQLCHQLEP GSWIITDVSF DSLRNYPFRL PRSRSWRRPS GCLIQELPNS  420
TSCMVTWIEH VEVDDKIQTH RLYRDLVSTN AAYGAQRWIM ELQRMCHRSM SYALENIPDH  480
EYGGVINRNE GRRSVMRLGH RLVRLFSENL NMSGKVEFPQ LSVEYNSGVR ISARRCTEKG  540
QPNGTIVIAA TSLWLPLHYH TVFEFLTDIN KRSQWDVLFC TTPVHYIAHI SNGTHPANNT  600
SIIQPFMSSE NNAVIIQESF IDPVGSSYIV YAPVDVEAIN VAISGDDSST IPILPSGFVV  660
CGDGRASMMS NSTTIIAPSV LGGVGSYGYQ HRSEGGSLLT VAFQILVNTI TCGPNLVNME  720
SVDSINTLLT STVQKIKDAL NCNALH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4M8U9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025647253.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A444ZDV50.0A0A444ZDV5_ARAHY; Uncharacterized protein
STRINGGLYMA15G13950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-160homeodomain GLABROUS 11