PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.4KG33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 244aa MW: 26939.1 Da PI: 8.5327 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.1 | 1.2e-07 | 52 | 98 | 1 | 49 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkte 49 kfY++YAk vGFs+r+++++k+ +ei+++ +Cs + k + + ++te Araip.4KG33 52 KFYKDYAKVVGFSTRVRSTNKK--GNEIKNQLITCSIKKKWKLKISSTE 98 6****************98887..8889********9998888777633 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-5 | 52 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MGEPCLGVNQ EYLGVFQECL DLYLHSIQIY GVDEQFVSKI GMTFNTLKDA AKFYKDYAKV 60 VGFSTRVRST NKKGNEIKNQ LITCSIKKKW KLKISSTEKT NPSAGFEKRD ARVNASSPPL 120 PCLPYYNDTN AAFDFLGSLR GKPTYPHKVP TIITTRIIST ISINTFPCPE GQTYSQTCEG 180 PNGTQCLPLI LEIPKRRTMA RVIESLVCAL PSRTAPDLGN GNCVHCGNGC DEKLLPPPPD 240 LPPC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.4KG33 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |