PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.4J5UA

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 1226aa MW: 134665 Da PI: 6.344

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.4J5UA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.9e-21	87	142	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+ +++p++++r++L+++lgL+ +qVk+WFqNrR+++k Araip.4J5UA 87 KKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMK 142 79999************************************************999 PP
2	Homeobox	65.6	6.9e-21	535	590	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+ +++p++++r++L+++lgL+ +qVk+WFqNrR+++k Araip.4J5UA 535 KKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMK 590 79999************************************************999 PP
3	START	48.1	3.3e-16	296	421	2	114
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la+ a++el+k+a+a++p+W k+ e++n++e+ + + + + +ea+r++gvv+ ++ lve+++d +W+e+++ +a tl+vi s Araip.4J5UA 296 LALVAMDELIKMAQADSPLWIKMDggkEILNQEEYARMSSFI-SptspgYVTEASRETGVVIINSSALVETMMDPE-RWSEMFPsmvsRAITLDVIAS 391 67889*******************9999999987655322.1356789************9999988888.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRy 114 g g + q+lsplvp R f+R Araip.4J5UA 392 GmggsrnG----SLQVNQLLSPLVPvRQLSFLRL 421 66433....444445666*********996 PP
4	START	142.7	3.5e-45	744	968	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la+ a++el+k+a+a++p+W k+ e++n++e+ + + + + +ea+r++gvv+ ++ lve+++d +W+e+++ +a tl+vi s Araip.4J5UA 744 LALVAMDELIKMAQADSPLWIKMDggkEILNQEEYARMSSFI-SptspgYVTEASRETGVVIINSSALVETMMDPE-RWSEMFPsmvsRAITLDVIAS 839 67889*******************9999999987655322.1356789************9999988888.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE............EEEEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh............skvtw 166 g g lq+m+ae q+lsplvp R f+R+++q+ +g w++vd S+d ++ +lpSg+l+++++ng k+tw Araip.4J5UA 840 GmggsrnGSLQVMQAEIQLLSPLVPvRQLSFLRFCKQHAEGLWAVVDASIDAGRNFK---------RLPSGFLVQDTPNGFskasvalisnacHKITW 928 **************************************************975.........7********************9669* PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh ++++l+h+l+r+l+ sgl +ga +w atlqrqce+ Araip.4J5UA 929 VEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCEC 968 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-21	73	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-19	74	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	84	144	IPR001356	Homeobox domain
SMART	SM00389	7.7E-19	86	148	IPR001356	Homeobox domain
CDD	cd00086	5.71E-18	87	144	No hit	No description
Pfam	PF00046	2.0E-18	87	142	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	20.217	286	420	IPR002913	START domain
SuperFamily	SSF55961	4.12E-9	295	475	No hit	No description
Pfam	PF01852	3.8E-10	296	421	IPR002913	START domain
Gene3D	G3DSA:1.10.10.60	3.4E-21	521	592	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-19	522	592	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	532	592	IPR001356	Homeobox domain
SMART	SM00389	7.7E-19	534	596	IPR001356	Homeobox domain
CDD	cd00086	5.71E-18	535	592	No hit	No description
Pfam	PF00046	2.0E-18	535	590	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	567	590	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	36.978	734	971	IPR002913	START domain
SuperFamily	SSF55961	9.34E-27	737	968	No hit	No description
CDD	cd08875	8.25E-102	738	967	No hit	No description
SMART	SM00234	9.3E-30	743	968	IPR002913	START domain
Pfam	PF01852	1.2E-37	744	968	IPR002913	START domain
SuperFamily	SSF55961	1.19E-14	987	1210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1226 aa Download sequence Send to blast
MPGFSAFELP LSSPLISMSK QNFPTLSFSN REMMEGHSEL GLIGDHFDGG LLGRIKEDGY 60 ESRSGSDNFE GASGDDQEAA NDQPKRKKKY HRHTPHQTQE LEAFFKDCNH PDEKQRADLS 120 RRLGLENKQV KFWFQNRRTQ MKTQIERHEN MILKQENERL RAENSVMREA MANPMCNNCG 180 GTAIPGQISF DEHQIRIENA RLKDELNRIC ALANKFLGRP ISSLASPMSL PASNSGLELG 240 IGRNGFSGGS SGLGMSMGLD FGDFSGGTLP AISGIRSPMG LMGNEIHAER SMLLELALVA 300 MDELIKMAQA DSPLWIKMDG GKEILNQEEY ARMSSFISPT SPGYVTEASR ETGVVIINSS 360 ALVETMMDPE RWSEMFPSMV SRAITLDVIA SGMGGSRNGS LQVNQLLSPL VPVRQLSFLR 420 LLVHHGHPLL LGSLITWVEH SQYDESLIHQ LYRPKTVGRG NIGGRVVADI SPKNHSCLRE 480 MMEGHSELGL IGDHFDGGLL GRIKEDGYES RSGSDNFEGA SGDDQEAAND QPKRKKKYHR 540 HTPHQTQELE AFFKDCNHPD EKQRADLSRR LGLENKQVKF WFQNRRTQMK TQIERHENMI 600 LKQENERLRA ENSVMREAMA NPMCNNCGGT AIPGQISFDE HQIRIENARL KDELNRICAL 660 ANKFLGRPIS SLASPMSLPA SNSGLELGIG RNGFSGGSSG LGMSMGLDFG DFSGGTLPAI 720 SGIRSPMGLM GNEIHAERSM LLELALVAMD ELIKMAQADS PLWIKMDGGK EILNQEEYAR 780 MSSFISPTSP GYVTEASRET GVVIINSSAL VETMMDPERW SEMFPSMVSR AITLDVIASG 840 MGGSRNGSLQ VMQAEIQLLS PLVPVRQLSF LRFCKQHAEG LWAVVDASID AGRNFKRLPS 900 GFLVQDTPNG FSKASVALIS NACHKITWVE HSQYDESLIH QLYRPLIASG LGFGAPRWIA 960 TLQRQCECLA IHMSSSIPSE DATAISPAGR RSMLKLAQRM ANNFFSGICL SSSQKWDTHH 1020 LGNVGDEIKV MTRKNIDVPG EPPSIVLCAA TSVWMPVSRQ RVFDFLRDER MRGEWVILSA 1080 IGQMKEMLRI SKGQVDGNSL SVLRANANNG GESSNNTLFL QETWNDTSCS ALLYSPVEVE 1140 SLKVVMSGGD STYVALIPSG FTIHPDGHSG TQDGDDGGSS GCLLTVGLQI LLNSLPTAKL 1200 TAESVETVND LITGTIQKIK ASLGVA

Sequence ? help Back to Top

Protein Sequence Length: 1226 aa Download sequence Send to blast

MPGFSAFELP LSSPLISMSK QNFPTLSFSN REMMEGHSEL GLIGDHFDGG LLGRIKEDGY  60
ESRSGSDNFE GASGDDQEAA NDQPKRKKKY HRHTPHQTQE LEAFFKDCNH PDEKQRADLS  120
RRLGLENKQV KFWFQNRRTQ MKTQIERHEN MILKQENERL RAENSVMREA MANPMCNNCG  180
GTAIPGQISF DEHQIRIENA RLKDELNRIC ALANKFLGRP ISSLASPMSL PASNSGLELG  240
IGRNGFSGGS SGLGMSMGLD FGDFSGGTLP AISGIRSPMG LMGNEIHAER SMLLELALVA  300
MDELIKMAQA DSPLWIKMDG GKEILNQEEY ARMSSFISPT SPGYVTEASR ETGVVIINSS  360
ALVETMMDPE RWSEMFPSMV SRAITLDVIA SGMGGSRNGS LQVNQLLSPL VPVRQLSFLR  420
LLVHHGHPLL LGSLITWVEH SQYDESLIHQ LYRPKTVGRG NIGGRVVADI SPKNHSCLRE  480
MMEGHSELGL IGDHFDGGLL GRIKEDGYES RSGSDNFEGA SGDDQEAAND QPKRKKKYHR  540
HTPHQTQELE AFFKDCNHPD EKQRADLSRR LGLENKQVKF WFQNRRTQMK TQIERHENMI  600
LKQENERLRA ENSVMREAMA NPMCNNCGGT AIPGQISFDE HQIRIENARL KDELNRICAL  660
ANKFLGRPIS SLASPMSLPA SNSGLELGIG RNGFSGGSSG LGMSMGLDFG DFSGGTLPAI  720
SGIRSPMGLM GNEIHAERSM LLELALVAMD ELIKMAQADS PLWIKMDGGK EILNQEEYAR  780
MSSFISPTSP GYVTEASRET GVVIINSSAL VETMMDPERW SEMFPSMVSR AITLDVIASG  840
MGGSRNGSLQ VMQAEIQLLS PLVPVRQLSF LRFCKQHAEG LWAVVDASID AGRNFKRLPS  900
GFLVQDTPNG FSKASVALIS NACHKITWVE HSQYDESLIH QLYRPLIASG LGFGAPRWIA  960
TLQRQCECLA IHMSSSIPSE DATAISPAGR RSMLKLAQRM ANNFFSGICL SSSQKWDTHH  1020
LGNVGDEIKV MTRKNIDVPG EPPSIVLCAA TSVWMPVSRQ RVFDFLRDER MRGEWVILSA  1080
IGQMKEMLRI SKGQVDGNSL SVLRANANNG GESSNNTLFL QETWNDTSCS ALLYSPVEVE  1140
SLKVVMSGGD STYVALIPSG FTIHPDGHSG TQDGDDGGSS GCLLTVGLQI LLNSLPTAKL  1200
TAESVETVND LITGTIQKIK ASLGVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.4J5UA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020979736.1	0.0	homeobox-leucine zipper protein ROC5-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A444YXS6	0.0	A0A444YXS6_ARAHY; Uncharacterized protein
STRING	GLYMA10G38280.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]