PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.4DM65 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 122aa MW: 13839.5 Da PI: 7.2913 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.1 | 4.9e-12 | 52 | 116 | 1 | 70 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+e k +++ + +++t+++ +C a++ ++ Araip.4DM65 52 KFYRDYAKAAGFSTRVRSTNRK--RNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHT 116 6****************98887..5569***********99998776...8999************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-9 | 52 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
IIDDSTSDCQ LNQGEVDFEF KSNEVHEPLC VVDDQFVPKV GMTFTTFEDA GKFYRDYAKA 60 AGFSTRVRST NRKRNEIKNQ LITCSREEKW KSKISPTEKT NPTAGLNCPA RIYIHTLKDV 120 GA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.4DM65 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 1e-114 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020958614.1 | 3e-72 | uncharacterized protein LOC110262592 | ||||
TrEMBL | A0A444YPX9 | 1e-76 | A0A444YPX9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BA58 | 9e-76 | A0A445BA58_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 6e-07 | FAR1-related sequence 8 |