PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.4CU64 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 893aa MW: 101478 Da PI: 7.9152 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 157.8 | 2.2e-49 | 32 | 149 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpk.sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 +e ++rwl+++ei+aiL n + +++ ++ + p+ sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np f rrc Araip.4CU64 32 EEaRTRWLRPNEIHAILCNSKYFTINVKPVNLPTcSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRC 129 4559***********************9999997579************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ Araip.4CU64 130 YWLLDKSLEHIVLVHYRETQ 149 *****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 70.749 | 27 | 154 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.6E-73 | 30 | 149 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.9E-44 | 33 | 147 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.6E-5 | 336 | 450 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.55E-16 | 362 | 448 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 4.2E-4 | 363 | 447 | IPR002909 | IPT domain |
CDD | cd00204 | 7.67E-15 | 552 | 656 | No hit | No description |
SuperFamily | SSF48403 | 1.34E-18 | 552 | 659 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.8E-7 | 552 | 626 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.5E-17 | 555 | 659 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.831 | 564 | 656 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.434 | 597 | 629 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.1E-6 | 597 | 626 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2400 | 636 | 667 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.943 | 745 | 771 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 5.84E-6 | 750 | 811 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 22 | 760 | 782 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.199 | 761 | 790 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.24 | 763 | 781 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 783 | 805 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 784 | 808 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0058 | 788 | 805 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 13 | 859 | 881 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.114 | 861 | 889 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 893 aa Download sequence Send to blast |
MMMANNFAGR LVGSEIHGFH TLQDLDLGNI MEEARTRWLR PNEIHAILCN SKYFTINVKP 60 VNLPTCSGTI VLFDRKMLRN FRKDGHNWKK KKDGKTVKEA HEHLKVGNEE RIHVYYAHGQ 120 DNPGFVRRCY WLLDKSLEHI VLVHYRETQE LQASPAAPIN SHSSSGSDPN APWILSEEID 180 SGIKTTNAGE INNNITVKSH EQRLHEINTL EWDDLVVAND PNTSTINGGG KVPHFDQQNQ 240 SNLSNVANNL SAEIPSFDNL TQPIAGSHTF PENLNLQTDN QMNPNEQINH NVLVNGVFLD 300 TLGNGGLQSQ DSFGMWVNHM LSDSPCSVDE SAVESSVSSI HESYSSLVGD DKQTSLPEQV 360 FNLTDVSPAW VPSTEKSKIL VTGFFHKDAD LSKSNLLCVC GDVSVPVECV QVGVYRCWVP 420 PHSPGFVNLY LSFDGHKPIS QVVNFEYRTP ILHDPAAFME NNDNWDKFQF EMRLSYLLFT 480 KKNSLDVFSC TVSPKRLKEA RNFAIRTSFI SNSWQCLMKS TQYNRIPYSQ AKEDLFGISL 540 RSRLKEWILE RIILGCKTTE YDAQGQSVIH LCAILDYTWA VSLFSWSGLS LDFRDKFGWT 600 ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TPQNPGGQTA ADLAYMNGYD GLAAYLSEKA 660 LVRQFNDMSL AGNISGQLET NTTDPEDPEN LSEDQLYLKD TLAAYRTAAQ AAARIQAAFR 720 EHSLKLQTET IELLTPEAEA RKIVAAMKIQ HAFRNFESRK MMKAAARIQY TYRTWKIRRE 780 FLNMRHQAIK IQAAFRCFQL RKHYRKILWS VGVVEKALLR WRLKRKGLRG LHVNNADQKQ 840 EGDGEEEFFR IGRKQAEERV ERSVVRVQAM FRSKKAQQDY RRMKLALNQA NIT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.4CU64 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016197987.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X4 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A445EM74 | 0.0 | A0A445EM74_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G37090.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
---|---|---|---|
|