PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4C1AU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 216aa    MW: 24591.1 Da    PI: 7.7144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4C1AUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-125093654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Araip.4C1AU 50 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 93
                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4914493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1647107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-45193No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1651107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-105193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.16E-4142183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLVEEELQSL EMQRECKMEA SQSSSPPVFN SERKNNNRAK KVEGQPSKNL MAERRRRKRL  60
NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLDKINTL KQEIQVVDDS NGILSNDIHP  120
NDILVRNSPK FDVERRNNNG DTRVEICCGG KPGMLLSTVN TLEALGLDIQ HCVISCFNDF  180
TMQASCSEEL EQKRMVSSED IKQALFRTAG YGGRCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4C1AU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167273.11e-157transcription factor bHLH93
RefseqXP_025667371.11e-157transcription factor bHLH93
SwissprotQ9LSL12e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A444YA041e-155A0A444YA04_ARAHY; Uncharacterized protein
STRINGGLYMA14G36370.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]