PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.49QGA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 20116.4 Da PI: 4.3092 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.3 | 1.2e-14 | 3 | 58 | 44 | 99 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 l+k l ++er++am++++ye+e+ra dPv+G++ vi++lq+++e +ael+l+ + Araip.49QGA 3 DLIKPLGPTERNIAMETIIYESEMRAYDPVNGCCTVIQQLQSEIEYRQAELQLVLH 58 67888999*******************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.053 | 1 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-11 | 3 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MTDLIKPLGP TERNIAMETI IYESEMRAYD PVNGCCTVIQ QLQSEIEYRQ AELQLVLHRL 60 ALFKAQAQQQ SSSCNQANNV EGIPFQPDQY YEATNMDSNS SITHEVDLNA WMMQNLQSPA 120 LLSPLALTNE NENGNVGVDD NNGYVYDQKH MLDLGFKETK SNHQTPVEGM HYSGMKQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.49QGA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016167842.2 | 1e-132 | LOB domain-containing protein 22-like | ||||
Refseq | XP_025671585.1 | 1e-131 | LOB domain-containing protein 22 | ||||
TrEMBL | A0A444Y8Q5 | 1e-127 | A0A444Y8Q5_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-16 | LOB domain-containing protein 22 |