PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.47LJN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 656aa    MW: 72613.7 Da    PI: 7.6951
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.47LJNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-171421556
                 HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Araip.47LJN  1 MEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 42
                 79************************************9877 PP
2START214.24.6e-671663954206
                  HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
        START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                  ++a++el+++a+ +ep+W +s+    e++n+de+++ f++ ++              + +ea+r++++v+ +l++l++++ld + qW+e+++    ka
  Araip.47LJN 166 NKAMEELITMATMGEPLWLRSVetgrEILNYDEYIKHFSSLQNsssnntntpssskrSIIEASRDTALVFVDLPRLLQTFLDAN-QWKEMFPclisKA 262
                  579***********************************999889****************************************.************* PP

                  EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
        START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                  +t++vi++g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+ ++w+i dvS+d  +++  ++s+v+++++pSg++ie+ksngh+kvtwveh 
  Araip.47LJN 263 ATVDVICNGegsnrnGAVQLMFAEVQMLTPMVPtREVYFVRYSKQLSSEQWAIIDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHL 359
                  ***************************************************************98.9******************************* PP

                  E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +++++ +h ++r +v+sg+a+ga++w +tlq qce+
  Araip.47LJN 360 ECQKSPVHTMYRTIVNSGMAFGARHWISTLQLQCER 395
                  **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.2E-14142IPR001356Homeobox domain
CDDcd000869.68E-14142No hitNo description
PROSITE profilePS5007116.115144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-15152IPR009057Homeodomain-like
SuperFamilySSF466898.77E-14149IPR009057Homeodomain-like
SMARTSM003892.2E-6148IPR001356Homeobox domain
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084839.452154398IPR002913START domain
SuperFamilySSF559613.3E-31156395No hitNo description
CDDcd088752.03E-108158394No hitNo description
SMARTSM002348.0E-65163395IPR002913START domain
PfamPF018527.4E-53166395IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-5280389IPR023393START-like domain
SuperFamilySSF559614.26E-14417589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEALFKESPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKTEIEKL  60
KEKNKGLRET INKACCPNCG VATTSTRDGA IPTEEQQLRI ENAKLKAEIE KLRGALGKYG  120
GSGGGSTSPS CSSGAAGGHE QENRSSLDFY TGIFGVDKSR IMDTVNKAME ELITMATMGE  180
PLWLRSVETG REILNYDEYI KHFSSLQNSS SNNTNTPSSS KRSIIEASRD TALVFVDLPR  240
LLQTFLDANQ WKEMFPCLIS KAATVDVICN GEGSNRNGAV QLMFAEVQML TPMVPTREVY  300
FVRYSKQLSS EQWAIIDVSI DKVEDNIDAS LVKCRKRPSG CIIEDKSNGH CKVTWVEHLE  360
CQKSPVHTMY RTIVNSGMAF GARHWISTLQ LQCERLVFFM ATNVPMKDST GVATLAGRKS  420
ILKLAQRMTW GFCHAVGASS FHTWTKVTSK TGEDIRISSR KNLNDPGEPL GLILCAVSSV  480
WLPVSPNVLF DFLRDETRRT EWDIMSSGGS VQSIANLAKG QDRGNAVTIQ TIKSKENSMW  540
VVQDCCTNAY ESMVVYAPVD ITGIQSAMTG CDSSNLAVLP SGFSIVPDGM ESRPVVITSR  600
QEEKNTEGGS LFTIAFQILT NASPTAKLTM ESVESVNTLL SCTLRNIRTS LQCEDG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.47LJN
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169615.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A444Y9A40.0A0A444Y9A4_ARAHY; Uncharacterized protein
STRINGGLYMA15G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]