PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.45TAK
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 729aa    MW: 79709.2 Da    PI: 6.7452
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.45TAKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93e-16437475240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Araip.45TAK 437 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 475
                  689**********************************96 PP
2TCR50.73.7e-16522560139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Araip.45TAK 522 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 560
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18436477IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.685437562IPR005172CRC domain
PfamPF036389.9E-12439474IPR005172CRC domain
SMARTSM011144.4E-17522563IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11524560IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
EDSPVFNFLN SLSPIKPVKS VHITQTFSSI SFSSPPSVFT SPHVNSNKES RFLRRHNLLD  60
TSKPKVTSED ENQTGSGEQA LTDSTHARNN SRELEKNADK GTSIGDASIE PASEQAKFSI  120
ELPQTLKYES GSPGYDPILC GDEANTLLSL PSSEAAPDVA CSHESSKKNL VEGELHLHGI  180
CQTEPKIDGT ECDWDNLINN ASDMLIFSSP NVSEAFKDLM NKQLDPSGRI MHIVNQVASG  240
SGHENEDHPP KPGLASDTQY TQENIANVAL VASNPCEKMD DEHVYVIHRG IRRRCLDFEM  300
ASVRRNNSDG NSNSSSNATK SDERNTGGDS RRCFLPGIGL HLNALATLKE HRGMKNEKSS  360
SGRQLNIPSS TSSLLPQEHH LLLLPASSER DMELPENEVQ PVEDCSQSLS LMAVEEFNQN  420
SPKKKRRKVE TAGESESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQD CFNKPIHEDT  480
VLQTRKQIES RNPLAFAPKV IRSSDSVSEI ADDPNKTPAS ARHKRGCNCK KSSCLKKYCE  540
CYQGGVGCSI SCRCEGCKNA FGRKDGSAGI DAEAEEETEA SEKGEVEKAL QKTEIQNIEE  600
NQNSALQATP LRLSRPLLPL PFSSKGKPPR SFIATISGSA LIASQKLGKP NILRPQVKLE  660
KPHQTVADDE MMDIIQGDSS PIACIKTSSP NGKRISSPNC ELGSSPTRRG GRKLILHSIP  720
SFPSLTHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1743955912120Protein lin-54 homolog
5fd3_B1e-1743955912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422426KKKRR
2422427KKKRRK
3423427KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.45TAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176116.10.0protein tesmin/TSO1-like CXC 2 isoform X2
RefseqXP_025675864.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A444XX050.0A0A444XX05_ARAHY; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-125TESMIN/TSO1-like CXC 2