PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.3P8WL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YB | ||||||||
Protein Properties | Length: 151aa MW: 16728.8 Da PI: 6.0766 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45.2 | 2.2e-14 | 12 | 106 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP + v ri+k l +++ is kda e + fi ++++ a+d c++ kr+ +n+dd++ al + f +++ plk+ l+ +r+ ++ Araip.3P8WL 12 EELPRTIVRRIVKDKLSrcsEDGDISvnKDALLAFSESARIFIHYISATANDICKESKRQIVNADDIFKALEETDFSEFIRPLKASLEDFRKKNA 106 57899999999999986222455554338999999********************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-32 | 10 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-10 | 13 | 82 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.38E-25 | 14 | 135 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MAEEAKPVPE AEELPRTIVR RIVKDKLSRC SEDGDISVNK DALLAFSESA RIFIHYISAT 60 ANDICKESKR QIVNADDIFK ALEETDFSEF IRPLKASLED FRKKNAGKKA AVSKEKESGK 120 NKKRKVEGEP SGKVKSDNGE SPEKGESGDA E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.3P8WL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187587.1 | 1e-103 | DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_025641569.1 | 1e-103 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A445AAE4 | 1e-102 | A0A445AAE4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G18960.1 | 2e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 4e-42 | nuclear factor Y, subunit B11 |