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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.3G35C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9345.33 Da PI: 9.7339 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 11 | 56 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W++ + + + +a + + ++ +W Iar +g g+t++++k ++ Araip.3G35C 11 SWSAKDNKAFERALAVYDKDtpdRWYNIARAVG-GKTPEDVKRHYER 56 7********************************.**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.608 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 4.8E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.02E-13 | 10 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 11 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.8E-7 | 11 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.92E-6 | 18 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MASSSMQSSS SWSAKDNKAF ERALAVYDKD TPDRWYNIAR AVGGKTPEDV KRHYERLVHD 60 VRHIESGQVP YPNYKKSGGR ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-36 | 3 | 79 | 2 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.3G35C |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208680 | 1e-124 | KF208680.1 Arachis hypogaea putative MYB-related protein 26 (MYB26) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025626028.1 | 1e-53 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 2e-36 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A445AI58 | 2e-54 | A0A445AI58_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445ED91 | 1e-53 | A0A445ED91_ARAHY; Uncharacterized protein | ||||
STRING | EMJ02663 | 4e-40 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-32 | RAD-like 1 |
Publications ? help Back to Top | |||
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