PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.38ZCB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30715.7 Da    PI: 7.3948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.38ZCBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i+fs+tgkl+ yss
  Araip.38ZCB  9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFHYSS 59
                 79***********************************************96 PP
2K-box58.23.7e-20861701296
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                  + +e l +e+a L++++ +L+  + ++lGe++  L+++eL +Le+++++s+ ++R+++nell +q+e+l++ke+ l++en +L++
  Araip.38ZCB  86 HLQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIACLQYEELTKLEHEVQSSVARVRKRQNELLQQQLENLRRKERILEDENCNLSN 170
                  3345667899************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-32289IPR002100Transcription factor, MADS-box
CDDcd002655.08E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-1785169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.4588179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIVFSN TGKLFHYSSH  60
PYRMDQIIEK YQRSTGTRIT RHGHSHLQED LLTEMAMLRR QNLSLEMGIQ RYLGEGIACL  120
QYEELTKLEH EVQSSVARVR KRQNELLQQQ LENLRRKERI LEDENCNLSN WEQQAAVLEF  180
ERAAASNCGN NKAVMDHHQL PFYDDEQASA SAGTILQLGA PHVPQQQLHP YPYLQLAQPN  240
VHHDSLTGLL MGTSKWVIEK DGGDPFDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19171169MEF2C
5f28_B2e-19171169MEF2C
5f28_C2e-19171169MEF2C
5f28_D2e-19171169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.38ZCB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179342.10.0MADS-box protein GGM13
RefseqXP_025684315.10.0MADS-box protein GGM13 isoform X1
TrEMBLA0A444XB081e-151A0A444XB08_ARAHY; Uncharacterized protein
STRINGXP_004498126.11e-106(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-45MIKC_MADS family protein