PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.38X68

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 865aa MW: 95607.2 Da PI: 6.5038

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.38X68	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	565	616	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Araip.38X68 565 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 616 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	555	636	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-24	569	616	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-23	748	848	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-24	758	843	No hit	No description
SMART	SM00666	2.1E-29	759	846	IPR000270	PB1 domain
PROSITE profile	PS51745	24.746	759	846	IPR000270	PB1 domain
Pfam	PF00564	9.6E-18	760	845	IPR000270	PB1 domain
CDD	cd06407	9.81E-41	760	845	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MEYGGIVHNE NGGFGSLSES AVEAEVDLVD ELLVEGCWVE TTSAGGCYNW MHNPSDAVVA 60 PQPQYLEMLQ LQLQEESSSS SSDQESLVGK RWWIGPTRPG PSSSSSSSSS SSVKERLVVA 120 VGYLKDYTKN NNLLIQIWVP PRRSPLPLPL PLPLDVLAFP NPSPNPNPNL CVRFLRSHEY 180 SHHYQAQQHY DLRGSIALPV FERGTATCLG VLDILITNHL NLTNNYRPQL DNVCNALEAV 240 DFRSSHQNLN ANFIPPAIKV YEELYQAALN EIVEVLTSVC KTQNLPLGLT WAPCIQQGKC 300 GCGHSSAMCV STVDTACYVG DLEMLGFQEA CSEYHLFKGQ GIVGTAFTSA KPCFAIDITA 360 FSRAEYPLSH LANIFGLHAA VAIPLRSLYT GSADFVLEFF LPKDCHDTEQ QKHMLNSLSM 420 LVQQACRSLH VATDDDFTPP MLTHHQAQAQ IMEEACSKDQ SWIAHMMEAQ VQQKGKGVCV 480 SLEYQMEEPK EEFKVTTNWD TTNDQAHHQL FSSSDFGHID VLEHSRSRAS TAVDGGEESY 540 ALGGRRSSSS GSGGRKSGDK RRTKAEKTIS LPVLRQYFAG SLKDAAKSIG VCPTTLKRIC 600 RQHGITRWPS RKIKKVGHSL KKLQLVIDSV QGAEGAIQIG SFYASFPELS STDLSSRSES 660 SPSKKTHTTN IPHHQNPNNN TFLKSPPSSA CSQTLDVVMT ESSEAALLLN RAHSEAAELL 720 QHASLQSQED TKHNSFISSR SNNKSHHHHS QDRDKERGAF RVKATFGDEK IRFSLQPNWG 780 FRDLQLEMAR RFNLNDISIS SSNIDLKYLD EDGEWVLLAC DADLEECKDI HRSSQSRTIR 840 LSLFQASPLN HLATNTFGNG TTSPS

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MEYGGIVHNE NGGFGSLSES AVEAEVDLVD ELLVEGCWVE TTSAGGCYNW MHNPSDAVVA  60
PQPQYLEMLQ LQLQEESSSS SSDQESLVGK RWWIGPTRPG PSSSSSSSSS SSVKERLVVA  120
VGYLKDYTKN NNLLIQIWVP PRRSPLPLPL PLPLDVLAFP NPSPNPNPNL CVRFLRSHEY  180
SHHYQAQQHY DLRGSIALPV FERGTATCLG VLDILITNHL NLTNNYRPQL DNVCNALEAV  240
DFRSSHQNLN ANFIPPAIKV YEELYQAALN EIVEVLTSVC KTQNLPLGLT WAPCIQQGKC  300
GCGHSSAMCV STVDTACYVG DLEMLGFQEA CSEYHLFKGQ GIVGTAFTSA KPCFAIDITA  360
FSRAEYPLSH LANIFGLHAA VAIPLRSLYT GSADFVLEFF LPKDCHDTEQ QKHMLNSLSM  420
LVQQACRSLH VATDDDFTPP MLTHHQAQAQ IMEEACSKDQ SWIAHMMEAQ VQQKGKGVCV  480
SLEYQMEEPK EEFKVTTNWD TTNDQAHHQL FSSSDFGHID VLEHSRSRAS TAVDGGEESY  540
ALGGRRSSSS GSGGRKSGDK RRTKAEKTIS LPVLRQYFAG SLKDAAKSIG VCPTTLKRIC  600
RQHGITRWPS RKIKKVGHSL KKLQLVIDSV QGAEGAIQIG SFYASFPELS STDLSSRSES  660
SPSKKTHTTN IPHHQNPNNN TFLKSPPSSA CSQTLDVVMT ESSEAALLLN RAHSEAAELL  720
QHASLQSQED TKHNSFISSR SNNKSHHHHS QDRDKERGAF RVKATFGDEK IRFSLQPNWG  780
FRDLQLEMAR RFNLNDISIS SSNIDLKYLD EDGEWVLLAC DADLEECKDI HRSSQSRTIR  840
LSLFQASPLN HLATNTFGNG TTSPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.38X68

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193058.1	0.0	protein NLP2-like
Refseq	XP_025640218.1	0.0	protein NLP2
TrEMBL	A0A445DL99	0.0	A0A445DL99_ARAHY; Uncharacterized protein
STRING	XP_004491641.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	1e-158	Nin-like family protein