PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.34SQ4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 428aa MW: 45588.2 Da PI: 8.6146 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.2e-05 | 195 | 217 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Araip.34SQ4 195 ACSQCGEVFPKMESLELHQAVrH 217 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.85 | 194 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 194 | 217 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 5.76E-24 | 219 | 424 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.4E-13 | 223 | 424 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MALLALLPEH SLPNNNNGSR VHDPSASKST MGSSCSSICS FRDVVHGNTR VVHRADNSSP 60 ESSSLGQQET GLLSRKPAAK SSRRSSSSSS GKSNGGATYT PSSSRGMQFR KLSGCYESLL 120 PEHSLPNNNN GSRVHDPSAS KSTMGSSCSS ICSFRDVVHG NTRIELRADN SSPESSSLGQ 180 QETGLLPIPR SSVCACSQCG EVFPKMESLE LHQAVRHAVW ELGPEDSGRN IVEIIFKSSW 240 LKKDNSICKI ERILKVQNSQ RTIQRFEECR DSVKSRAQNS SKKNPRCAAD GNELLRFHCT 300 TLTCPLGAQG STALCTAIPG CGVCTVIRHG FQGGGKGVKT TASSGRAHDS LAGHCGAPRA 360 MLVCRVIAGR VRRVPEDAPP EDDGVSASGG YDSFAGSAGI YSNLEELVVF NPRAILPCFV 420 VVYKVLSC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.34SQ4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015969843.1 | 0.0 | uncharacterized protein LOC107493257 | ||||
TrEMBL | A0A445CJW0 | 0.0 | A0A445CJW0_ARAHY; Uncharacterized protein | ||||
STRING | XP_010104443.1 | 1e-149 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-113 | C2H2-like zinc finger protein |