PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2CH00
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 445aa    MW: 49296 Da    PI: 6.4615
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2CH00genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073904232154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Araip.2CH00 390 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 423
                  469*****************************87 PP
2ELK28.82.7e-10344365122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Araip.2CH00 344 ELKHELKNGYKEKIVDIREEIL 365
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-19149193IPR005540KNOX1
PfamPF037909.1E-18152192IPR005540KNOX1
SMARTSM012569.9E-24201287IPR005541KNOX2
PfamPF037912.9E-12248286IPR005541KNOX2
PfamPF037892.4E-6344365IPR005539ELK domain
PROSITE profilePS512139.69344364IPR005539ELK domain
SMARTSM011887.4E-4344365IPR005539ELK domain
PROSITE profilePS5007111.726364427IPR001356Homeobox domain
SuperFamilySSF466894.71E-16366430IPR009057Homeodomain-like
SMARTSM003892.4E-11366431IPR001356Homeobox domain
CDDcd000862.81E-12367428No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25371428IPR009057Homeodomain-like
PfamPF059201.3E-17384423IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAYHNHNPLS VSDSHDDLPL HHFTHQSNTF PSSPPHPNSK PNSDPLQTTA PSWLNNALLR  60
TNFTDTTNTT ATSNANNTNA NSNFLNLHTA SDSAASQPSP WLDATGVNFE PVDLKTGIAN  120
AKGDVTAAVV GDGGGGDGGG GGMVNWQVGR WKAEILAHPL YEQLLSAHVA CLRIATPVDQ  180
LPRIDAQLAQ SQNVVSKYSA FGHGVGDDKE LDQFMVTLPL TVLKSTFASF LVYSYRVGVF  240
SCFLLQSHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD  300
DEDDQVDSEA NLFDGSLDGT DSMGFGPLIP TENERSLMER VRQELKHELK NGYKEKIVDI  360
REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  420
RKRNWHSNPS SSTVLKSKRK RYFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12367431872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420440RKRNWHSNPSSSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2CH00
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311740.0KT031174.1 Glycine max clone HN_CCL_151 homeodomain/HOMEOBOX transcription factor (Glyma17g32980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020960849.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_020960850.10.0homeobox protein knotted-1-like 3 isoform X3
SwissprotP480001e-177KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A444YV650.0A0A444YV65_ARAHY; Uncharacterized protein
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-171KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]