PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2BB1N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 479aa    MW: 54844 Da    PI: 8.1316
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2BB1NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1758144191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+eg+ +++ +    +++t+++   +C a++ ++  +  g w ++k++l+H+H+++p
  Araip.2BB1N  58 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGRWKSKISP---TEKTNPTAGLNCPARIYIHILNdVGAWIISKVVLDHSHPCCP 144
                  6****************98887..8889************9998777...8999***************98879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-1558144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDDSTSDCQV NQGEVDFEFE SNEVPELSCC RSGPLSVVDD QFVPKVGITF TTLEDAGKFY  60
RNYAKAAGFS TRVRSTNRKG NEIKNQLITC SREGRWKSKI SPTEKTNPTA GLNCPARIYI  120
HILNDVGAWI ISKVVLDHSH PCCPSKAEML KQHRELSMSI RRTIENNEEA GMRSTQRSES  180
MHSFFNKFIT RNSSLIQFVK QYDNCLGSRE QAERESDDAD FHTVIPCAIK FSIEAQEVQT  240
QFIGKANCIT RLTNSALGYS VYEVGEQVSS SIFNKFVVTY DSVASEVKCQ YLLFESRRIL  300
CRHTLSLLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLEPISK RFDQLVFRLQ  360
NICEFASESE ELTVILHRAY DNFMVEMESL KAKRKGTSSL FHEDANLESI NELQSPPRIR  420
IRGHPKNRLG YQQQRITLWL NLFDAASVVH SNSSQYQGHV MNYQFRVPAT ADNSLGVFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2BB1N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-21far-red elongated hypocotyls 3